This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3onp

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
m (Protected "3onp" [edit=sysop:move=sysop])
Current revision (07:05, 5 August 2016) (edit) (undo)
 
(One intermediate revision not shown.)
Line 1: Line 1:
-
{{STRUCTURE_3onp| PDB=3onp | SCENE= }}
 
-
===Crystal Structure of tRNA/rRNA Methyltransferase SpoU from Rhodobacter sphaeroides===
 
-
==About this Structure==
+
==Crystal Structure of tRNA/rRNA Methyltransferase SpoU from Rhodobacter sphaeroides==
-
[[3onp]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Rhodobacter_sphaeroides Rhodobacter sphaeroides]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3ONP OCA].
+
<StructureSection load='3onp' size='340' side='right' caption='[[3onp]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
-
[[Category: Rhodobacter sphaeroides]]
+
== Structural highlights ==
-
[[Category: Jedrzejczak, R.]]
+
<table><tr><td colspan='2'>[[3onp]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Rhos4 Rhos4]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3ONP OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3ONP FirstGlance]. <br>
-
[[Category: Joachimiak, A.]]
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACY:ACETIC+ACID'>ACY</scene>, <scene name='pdbligand=BME:BETA-MERCAPTOETHANOL'>BME</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
-
[[Category: Kim, Y.]]
+
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
[[Category: MCSG, Midwest Center for Structural Genomics.]]
+
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">RHOS4_30450, RSP_3829 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=272943 RHOS4])</td></tr>
-
[[Category: Tesar, C.]]
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3onp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3onp OCA], [http://pdbe.org/3onp PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3onp RCSB], [http://www.ebi.ac.uk/pdbsum/3onp PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3onp ProSAT]</span></td></tr>
 +
</table>
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/on/3onp_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3onp ConSurf].
 +
<div style="clear:both"></div>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Rhos4]]
 +
[[Category: Jedrzejczak, R]]
 +
[[Category: Joachimiak, A]]
 +
[[Category: Kim, Y]]
 +
[[Category: Structural genomic]]
 +
[[Category: Tesar, C]]
[[Category: Alpha-beta sandwich]]
[[Category: Alpha-beta sandwich]]
[[Category: Cytosol]]
[[Category: Cytosol]]
[[Category: Mcsg]]
[[Category: Mcsg]]
[[Category: Methyltransferase]]
[[Category: Methyltransferase]]
-
[[Category: Midwest center for structural genomic]]
+
[[Category: PSI, Protein structure initiative]]
-
[[Category: Protein structure initiative]]
+
-
[[Category: Psi-2]]
+
-
[[Category: Structural genomic]]
+
[[Category: Transferase]]
[[Category: Transferase]]

Current revision

Crystal Structure of tRNA/rRNA Methyltransferase SpoU from Rhodobacter sphaeroides

3onp, resolution 1.90Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools