This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3on4

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (20:49, 5 August 2016) (edit) (undo)
 
(One intermediate revision not shown.)
Line 1: Line 1:
-
{{STRUCTURE_3on4| PDB=3on4 | SCENE= }}
 
-
===Crystal structure of TetR transcriptional regulator from Legionella pneumophila===
 
-
==About this Structure==
+
==Crystal structure of TetR transcriptional regulator from Legionella pneumophila==
-
[[3on4]] is a 8 chain structure with sequence from [http://en.wikipedia.org/wiki/Legionella_pneumophila_subsp._pneumophila_str._philadelphia_1 Legionella pneumophila subsp. pneumophila str. philadelphia 1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3ON4 OCA].
+
<StructureSection load='3on4' size='340' side='right' caption='[[3on4]], [[Resolution|resolution]] 1.85&Aring;' scene=''>
-
[[Category: Legionella pneumophila subsp. pneumophila str. philadelphia 1]]
+
== Structural highlights ==
-
[[Category: Gu, M.]]
+
<table><tr><td colspan='2'>[[3on4]] is a 8 chain structure with sequence from [http://en.wikipedia.org/wiki/Legph Legph]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3ON4 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3ON4 FirstGlance]. <br>
-
[[Category: Joachimiak, A.]]
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene></td></tr>
-
[[Category: Li, H.]]
+
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
[[Category: MCSG, Midwest Center for Structural Genomics.]]
+
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">lpg1967 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=272624 LEGPH])</td></tr>
-
[[Category: Michalska, K.]]
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3on4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3on4 OCA], [http://pdbe.org/3on4 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3on4 RCSB], [http://www.ebi.ac.uk/pdbsum/3on4 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3on4 ProSAT]</span></td></tr>
-
[[Category: Mcsg]]
+
</table>
-
[[Category: Midwest center for structural genomic]]
+
== Evolutionary Conservation ==
-
[[Category: Protein structure initiative]]
+
[[Image:Consurf_key_small.gif|200px|right]]
-
[[Category: Psi-2]]
+
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/on/3on4_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3on4 ConSurf].
 +
<div style="clear:both"></div>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Legph]]
 +
[[Category: Gu, M]]
 +
[[Category: Joachimiak, A]]
 +
[[Category: Li, H]]
[[Category: Structural genomic]]
[[Category: Structural genomic]]
 +
[[Category: Michalska, K]]
 +
[[Category: Mcsg]]
 +
[[Category: PSI, Protein structure initiative]]
[[Category: Transcription]]
[[Category: Transcription]]
[[Category: Transcriptional regulator]]
[[Category: Transcriptional regulator]]

Current revision

Crystal structure of TetR transcriptional regulator from Legionella pneumophila

3on4, resolution 1.85Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools