This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2fzv

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (09:25, 14 February 2024) (edit) (undo)
 
(17 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2fzv.gif|left|200px]]<br /><applet load="2fzv" size="350" color="white" frame="true" align="right" spinBox="true"
 
-
caption="2fzv, resolution 1.70&Aring;" />
 
-
'''Crystal Structure of an apo form of a Flavin-binding Protein from Shigella flexneri'''<br />
 
-
==About this Structure==
+
==Crystal Structure of an apo form of a Flavin-binding Protein from Shigella flexneri==
-
2FZV is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Shigella_flexneri_2a Shigella flexneri 2a] with <scene name='pdbligand=CA:'>CA</scene> and <scene name='pdbligand=CL:'>CL</scene> as [http://en.wikipedia.org/wiki/ligands ligands]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2FZV OCA].
+
<StructureSection load='2fzv' size='340' side='right'caption='[[2fzv]], [[Resolution|resolution]] 1.70&Aring;' scene=''>
-
[[Category: Shigella flexneri 2a]]
+
== Structural highlights ==
-
[[Category: Single protein]]
+
<table><tr><td colspan='2'>[[2fzv]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Shigella_flexneri_2a_str._2457T Shigella flexneri 2a str. 2457T]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2FZV OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2FZV FirstGlance]. <br>
-
[[Category: Anderson, W F.]]
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.7&#8491;</td></tr>
-
[[Category: Brunzelle, J S.]]
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene></td></tr>
-
[[Category: Collart, F R.]]
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2fzv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2fzv OCA], [https://pdbe.org/2fzv PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2fzv RCSB], [https://www.ebi.ac.uk/pdbsum/2fzv PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2fzv ProSAT], [https://www.topsan.org/Proteins/MCSG/2fzv TOPSAN]</span></td></tr>
-
[[Category: MCSG, Midwest Center for Structural Genomics.]]
+
</table>
-
[[Category: Minasov, G.]]
+
== Function ==
-
[[Category: Shuvalova, L.]]
+
[https://www.uniprot.org/uniprot/ARREH_SHIFL ARREH_SHIFL] Has NADPH-dependent FMN reductase activity and very low azoreductase activity. No activity with NADH.<ref>PMID:17962405</ref>
-
[[Category: Vorontsov, I I.]]
+
== Evolutionary Conservation ==
-
[[Category: CA]]
+
[[Image:Consurf_key_small.gif|200px|right]]
-
[[Category: CL]]
+
Check<jmol>
-
[[Category: crystal structure]]
+
<jmolCheckbox>
-
[[Category: flavin binding protein]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/fz/2fzv_consurf.spt"</scriptWhenChecked>
-
[[Category: mcsg]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: midwest center for structural genomics]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: protein structure initiative]]
+
</jmolCheckbox>
-
[[Category: psi]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2fzv ConSurf].
-
[[Category: structural genomics]]
+
<div style="clear:both"></div>
-
 
+
== References ==
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Feb 21 17:26:46 2008''
+
<references/>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Large Structures]]
 +
[[Category: Shigella flexneri 2a str. 2457T]]
 +
[[Category: Anderson WF]]
 +
[[Category: Brunzelle JS]]
 +
[[Category: Collart FR]]
 +
[[Category: Joachimiak A]]
 +
[[Category: Minasov G]]
 +
[[Category: Shuvalova L]]
 +
[[Category: Vorontsov II]]

Current revision

Crystal Structure of an apo form of a Flavin-binding Protein from Shigella flexneri

PDB ID 2fzv

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools