2g9f

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[[Image:2g9f.jpg|left|200px]]<br /><applet load="2g9f" size="350" color="white" frame="true" align="right" spinBox="true"
 
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caption="2g9f, resolution 1.90&Aring;" />
 
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'''Crystal structure of intein-tagged mouse PNGase C-terminal domain'''<br />
 
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==About this Structure==
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==Crystal structure of intein-tagged mouse PNGase C-terminal domain==
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2G9F is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Mus_musculus Mus musculus] with <scene name='pdbligand=CL:'>CL</scene> and <scene name='pdbligand=GOL:'>GOL</scene> as [http://en.wikipedia.org/wiki/ligands ligands]. Active as [http://en.wikipedia.org/wiki/Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine_amidase Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.5.1.52 3.5.1.52] Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2G9F OCA].
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<StructureSection load='2g9f' size='340' side='right'caption='[[2g9f]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
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[[Category: Mus musculus]]
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== Structural highlights ==
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[[Category: Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase]]
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<table><tr><td colspan='2'>[[2g9f]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2G9F OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2G9F FirstGlance]. <br>
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[[Category: Single protein]]
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.9&#8491;</td></tr>
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[[Category: Lennarz, W J.]]
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
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[[Category: Li, G.]]
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2g9f FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2g9f OCA], [https://pdbe.org/2g9f PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2g9f RCSB], [https://www.ebi.ac.uk/pdbsum/2g9f PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2g9f ProSAT]</span></td></tr>
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[[Category: Schindelin, H.]]
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</table>
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[[Category: Wang, L.]]
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== Function ==
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[[Category: Zhao, G.]]
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[https://www.uniprot.org/uniprot/NGLY1_MOUSE NGLY1_MOUSE] Specifically deglycosylates the denatured form of N-linked glycoproteins in the cytoplasm and assists their proteasome-mediated degradation. Cleaves the beta-aspartyl-glucosamine (GlcNAc) of the glycan and the amide side chain of Asn, converting Asn to Asp. Prefers proteins containing high-mannose over those bearing complex type oligosaccharides. Can recognize misfolded proteins in the endoplasmic reticulum that are exported to the cytosol to be destroyed and deglycosylate them, while it has no activity toward native proteins. Deglycosylation is a prerequisite for subsequent proteasome-mediated degradation of some, but not all, misfolded glycoproteins.<ref>PMID:11562482</ref> <ref>PMID:12606569</ref> <ref>PMID:15358861</ref>
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[[Category: Zhou, X.]]
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== Evolutionary Conservation ==
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[[Category: CL]]
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[[Image:Consurf_key_small.gif|200px|right]]
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[[Category: GOL]]
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Check<jmol>
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[[Category: beta-sandwich]]
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/g9/2g9f_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2g9f ConSurf].
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<div style="clear:both"></div>
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Feb 21 17:29:27 2008''
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==See Also==
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*[[Peptide N-glycanase|Peptide N-glycanase]]
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== References ==
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<references/>
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__TOC__
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</StructureSection>
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[[Category: Large Structures]]
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[[Category: Mus musculus]]
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[[Category: Lennarz WJ]]
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[[Category: Li G]]
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[[Category: Schindelin H]]
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[[Category: Wang L]]
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[[Category: Zhao G]]
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[[Category: Zhou X]]

Current revision

Crystal structure of intein-tagged mouse PNGase C-terminal domain

PDB ID 2g9f

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