2gju

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:49, 25 October 2023) (edit) (undo)
 
(15 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2gju.gif|left|200px]]<br /><applet load="2gju" size="350" color="white" frame="true" align="right" spinBox="true"
 
-
caption="2gju, resolution 2.00&Aring;" />
 
-
'''Crystal structure of hypothetical protein PH1004 from Pyrococcus horikoshii OT3'''<br />
 
-
==About this Structure==
+
==Crystal structure of hypothetical protein PH1004 from Pyrococcus horikoshii OT3==
-
2GJU is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Pyrococcus_horikoshii Pyrococcus horikoshii] with <scene name='pdbligand=NA:'>NA</scene> and <scene name='pdbligand=PO4:'>PO4</scene> as [http://en.wikipedia.org/wiki/ligands ligands]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GJU OCA].
+
<StructureSection load='2gju' size='340' side='right'caption='[[2gju]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
-
[[Category: Pyrococcus horikoshii]]
+
== Structural highlights ==
-
[[Category: Single protein]]
+
<table><tr><td colspan='2'>[[2gju]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Pyrococcus_horikoshii_OT3 Pyrococcus horikoshii OT3]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GJU OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2GJU FirstGlance]. <br>
-
[[Category: Kunishima, N.]]
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
-
[[Category: RSGI, RIKEN Structural Genomics/Proteomics Initiative.]]
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
-
[[Category: Yamamoto, H.]]
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2gju FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2gju OCA], [https://pdbe.org/2gju PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2gju RCSB], [https://www.ebi.ac.uk/pdbsum/2gju PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2gju ProSAT], [https://www.topsan.org/Proteins/RSGI/2gju TOPSAN]</span></td></tr>
-
[[Category: NA]]
+
</table>
-
[[Category: PO4]]
+
== Function ==
-
[[Category: beta barrel]]
+
[https://www.uniprot.org/uniprot/O58732_PYRHO O58732_PYRHO]
-
[[Category: national project on protein structural and functional analyses]]
+
== Evolutionary Conservation ==
-
[[Category: nppsfa]]
+
[[Image:Consurf_key_small.gif|200px|right]]
-
[[Category: riken structural genomics/proteomics initiative]]
+
Check<jmol>
-
[[Category: rsgi]]
+
<jmolCheckbox>
-
[[Category: structural genomics]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gj/2gju_consurf.spt"</scriptWhenChecked>
-
 
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Feb 21 17:32:31 2008''
+
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2gju ConSurf].
 +
<div style="clear:both"></div>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Large Structures]]
 +
[[Category: Pyrococcus horikoshii OT3]]
 +
[[Category: Kunishima N]]
 +
[[Category: Yamamoto H]]

Current revision

Crystal structure of hypothetical protein PH1004 from Pyrococcus horikoshii OT3

PDB ID 2gju

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools