Sandbox Reserved 2

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Current revision (07:58, 14 May 2015) (edit) (undo)
 
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<Structure load='3cyy' size='450' frame='true' align='right' caption='Insert caption here' scene='Insert optional scene name here' />
 
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1.3CYY <scene name='Sandbox_Reserved_2/3cyy_secondstructure/1'>has second structures both α helix (pink) and β strand (yellow)</scene>.
 
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2.it appears to be soluble because<scene name='Sandbox_Reserved_2/3cyy_polar/1'> there are so much polar residues in surface</scene>
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== This page is about 2OO4. ==
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<Structure load='2OO4' size='350' frame='true' align='right' caption='Insert caption here' scene='Insert optional scene name here' />
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3.<scene name='Sandbox_Reserved_2/3cyy_tyr/2'>Tyr 198 is highly conserverd</scene>(hotpink color)because it
 
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forms cation-pie with the LYS 191 in chain A.
 
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4.3CYY<scene name='Sandbox_Reserved_2/3cyy_chain/1'>has the four chains.</scene>ChainA=B.(blue and green)ChainC=D.(yellow and pink)
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<scene name='54/545857/Charge/2'>Charges Displayed</scene>(<font color="blue">positive charges are blue</font>, <font color="red">negative charges are red</font>)
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<scene name='54/545857/Raibow/1'>Protein is colored in rainbow Displayed</scene>(According to the sequence N->C rainbow)
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<scene name='54/545857/Evolutionary_concerved/1'>concervation Displayed</scene>(purple is concerved and lite blue is variable)
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Ligands of 2OO4
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6 CA : Calcium ion 3 ions per chain
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1 ZN : Zinc ion (May be crystallization artifact)
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10 GOL: Glycerol (May be crystallization artifact)

Current revision

This Sandbox is Reserved from May 10, 2015, through July 31, 2015 for use by the class Protein 3D Structure Visualization & Structural Bioinformatics taught by Eric Martz and Keiichi Namba at Osaka University, Japan. This reservation includes Sandbox Reserved 1 through Sandbox Reserved 10. Syllabus.
To get started:
  • Click the 'edit this page tab at the top. Save the page after each step, then edit it again.
  • Click the 3D button (when editing, above the wikitext box) to insert Jmol.
  • show the Scene authoring tools, create a molecular scene, and save it. Copy the green link into the page.
  • Add a description of your scene. Use the buttons above the wikitext box for bold, italics, links, headlines, etc.

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This page is about 2OO4.

Insert caption here

Drag the structure with the mouse to rotate


(positive charges are blue, negative charges are red)

(According to the sequence N->C rainbow)

(purple is concerved and lite blue is variable)

Ligands of 2OO4

6 CA : Calcium ion 3 ions per chain

1 ZN : Zinc ion (May be crystallization artifact)

10 GOL: Glycerol (May be crystallization artifact)

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