Sandbox Reserved 14

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Current revision (07:14, 15 May 2014) (edit) (undo)
 
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<!-- INSERT YOUR SCENES AND TEXT BELOW THIS LINE -->
<!-- INSERT YOUR SCENES AND TEXT BELOW THIS LINE -->
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<Structure load='1d5r' size='450' frame='true' align='right' caption='Insert caption here' scene='Insert optional scene name here' />
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<Structure load='1d66' size='350' frame='true' align='right' caption='Insert caption here' scene='Insert optional scene name here' />
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<Div Align="center">
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This is the DNA-binding domain of the gal4 transcriptional regulatory protein, bound to DNA.
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<br><br>
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*<scene name='42/421644/Osaka1/1'>Here the DNA is solid</scene>
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<b>MENU</b>
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(atoms have van der Waals radii).
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<br>
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*The DNA-binding surface of the protein has <scene name='42/421644/Osaka1/2'>only positive charges</scene> to bind to the negatively charged DNA phosphate backbone.
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1.Show <scene name='Sandbox_Reserved_14/1d5r-chaeged2/4'>N(BLUE) -> C(RED) rainbow</scene>
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(<font color="blue">Positive</font>,
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<br><br>
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<font color="red">Negative</font>)
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2.Show <scene name='Sandbox_Reserved_14/1d5r-evocon/1'>evolutionary conservation</scene>
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<br>
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highly conserved(Burgandy color) ------> lowly conserved(Light blue)
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</Div>
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<br><br><br><br><br><br><br><br><br><br><br>
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<br><br><br><br><br><br><br><br><br><br><br>
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<Structure load='4gel' size='450' frame='true' align='left' caption='Insert caption here' scene='Insert optional scene name here' />
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<br><br><br>
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<Div Alighn="center">
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<b>MENU</b>
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<br>
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1.Show <scene name='Sandbox_Reserved_14/4gel_temp/2'> Coloured according to theier relative temprerature foctor</scene>
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<br>
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Lower is Blue.Higher is Red.
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<br><br>
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2.Show <scene name='Sandbox_Reserved_14/4gel_hydro/1'>Hydrophobic and Polar</scene>
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Hydrophobic amino acid is glay ball.<br>
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Polar amino acid is pink ball.
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</Div>
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Current revision

This Sandbox is Reserved from May 10, 2015, through July 31, 2015 for use by the class Protein 3D Structure Visualization & Structural Bioinformatics taught by Eric Martz and Keiichi Namba at Osaka University, Japan. This reservation includes Sandbox Reserved 1 through Sandbox Reserved 10. Syllabus.
To get started:
  • Click the 'edit this page tab at the top. Save the page after each step, then edit it again.
  • Click the 3D button (when editing, above the wikitext box) to insert Jmol.
  • show the Scene authoring tools, create a molecular scene, and save it. Copy the green link into the page.
  • Add a description of your scene. Use the buttons above the wikitext box for bold, italics, links, headlines, etc.

More help: Getting Started in Proteopedia, Help:Editing, Main Help Page.

Insert caption here

Drag the structure with the mouse to rotate

This is the DNA-binding domain of the gal4 transcriptional regulatory protein, bound to DNA.

(atoms have van der Waals radii).

  • The DNA-binding surface of the protein has to bind to the negatively charged DNA phosphate backbone.

(Positive, Negative)

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