3o87

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{{STRUCTURE_3o87| PDB=3o87 | SCENE= }}
 
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===Crystal structure of AmpC beta-lactamase in complex with a sulfonamide boronic acid inhibitor===
 
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{{ABSTRACT_PUBMED_20945905}}
 
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==Function==
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==Crystal structure of AmpC beta-lactamase in complex with a sulfonamide boronic acid inhibitor==
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[[http://www.uniprot.org/uniprot/AMPC_ECOLI AMPC_ECOLI]] This protein is a serine beta-lactamase with a substrate specificity for cephalosporins.
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<StructureSection load='3o87' size='340' side='right'caption='[[3o87]], [[Resolution|resolution]] 1.78&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[3o87]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli_K-12 Escherichia coli K-12]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3O87 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3O87 FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.78&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BSG:4-({[(DIHYDROXYBORANYL)METHYL]SULFAMOYL}METHYL)BENZOIC+ACID'>BSG</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3o87 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3o87 OCA], [https://pdbe.org/3o87 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3o87 RCSB], [https://www.ebi.ac.uk/pdbsum/3o87 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3o87 ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/AMPC_ECOLI AMPC_ECOLI] This protein is a serine beta-lactamase with a substrate specificity for cephalosporins.
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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We investigated a series of sulfonamide boronic acids that resulted from the merging of two unrelated AmpC beta-lactamase inhibitor series. The new boronic acids differed in the replacement of the canonical carboxamide, found in all penicillin and cephalosporin antibiotics, with a sulfonamide. Surprisingly, these sulfonamides had a highly distinct structure-activity relationship from the previously explored carboxamides, high ligand efficiencies (up to 0.91), and K(i) values down to 25 nM and up to 23 times better for smaller analogues. Conversely, K(i) values were 10-20 times worse for larger molecules than in the carboxamide congener series. X-ray crystal structures (1.6-1.8 A) of AmpC with three of the new sulfonamides suggest that this altered structure-activity relationship results from the different geometry and polarity of the sulfonamide versus the carboxamide. The most potent inhibitor reversed beta-lactamase-mediated resistance to third generation cephalosporins, lowering their minimum inhibitory concentrations up to 32-fold in cell culture.
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==About this Structure==
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Design, Synthesis, Crystal Structures, and Antimicrobial Activity of Sulfonamide Boronic Acids as beta-Lactamase Inhibitors.,Eidam O, Romagnoli C, Caselli E, Babaoglu K, Pohlhaus DT, Karpiak J, Bonnet R, Shoichet BK, Prati F J Med Chem. 2010 Oct 14. PMID:20945905<ref>PMID:20945905</ref>
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[[3o87]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli_k-12 Escherichia coli k-12]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3O87 OCA].
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==Reference==
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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<ref group="xtra">PMID:020945905</ref><references group="xtra"/><references/>
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</div>
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[[Category: Beta-lactamase]]
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<div class="pdbe-citations 3o87" style="background-color:#fffaf0;"></div>
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[[Category: Escherichia coli k-12]]
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[[Category: Eidam, O.]]
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==See Also==
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[[Category: Karpiak, J.]]
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*[[Beta-lactamase 3D structures|Beta-lactamase 3D structures]]
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[[Category: Romagnoli, C.]]
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== References ==
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[[Category: Shoichet, B K.]]
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<references/>
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[[Category: Cephalosporinase]]
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__TOC__
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[[Category: Class c]]
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</StructureSection>
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[[Category: Contains alpha helices and a beta sandwich / beta-lactamase-like fold / ampc beta-lactamase]]
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[[Category: Escherichia coli K-12]]
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[[Category: Hydrolase]]
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[[Category: Large Structures]]
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[[Category: Eidam O]]
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[[Category: Karpiak J]]
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[[Category: Romagnoli C]]
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[[Category: Shoichet BK]]

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Crystal structure of AmpC beta-lactamase in complex with a sulfonamide boronic acid inhibitor

PDB ID 3o87

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