This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
3gfz
From Proteopedia
(Difference between revisions)
| (4 intermediate revisions not shown.) | |||
| Line 1: | Line 1: | ||
| - | {{STRUCTURE_3gfz| PDB=3gfz | SCENE= }} | ||
| - | ===Klebsiella pneumoniae BlrP1 pH 6 manganese/cy-diGMP complex=== | ||
| - | {{ABSTRACT_PUBMED_19536266}} | ||
| - | == | + | ==Klebsiella pneumoniae BlrP1 pH 6 manganese/cy-diGMP complex== |
| - | [[3gfz]] is a 2 chain structure with sequence from [ | + | <StructureSection load='3gfz' size='340' side='right'caption='[[3gfz]], [[Resolution|resolution]] 2.05Å' scene=''> |
| + | == Structural highlights == | ||
| + | <table><tr><td colspan='2'>[[3gfz]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Klebsiella_pneumoniae_subsp._pneumoniae_MGH_78578 Klebsiella pneumoniae subsp. pneumoniae MGH 78578]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GFZ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3GFZ FirstGlance]. <br> | ||
| + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.05Å</td></tr> | ||
| + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=C2E:9,9-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d 3,2-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one)'>C2E</scene>, <scene name='pdbligand=FMN:FLAVIN+MONONUCLEOTIDE'>FMN</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene></td></tr> | ||
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3gfz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3gfz OCA], [https://pdbe.org/3gfz PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3gfz RCSB], [https://www.ebi.ac.uk/pdbsum/3gfz PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3gfz ProSAT]</span></td></tr> | ||
| + | </table> | ||
| + | == Function == | ||
| + | [https://www.uniprot.org/uniprot/A6T8V8_KLEP7 A6T8V8_KLEP7] | ||
| + | == Evolutionary Conservation == | ||
| + | [[Image:Consurf_key_small.gif|200px|right]] | ||
| + | Check<jmol> | ||
| + | <jmolCheckbox> | ||
| + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gf/3gfz_consurf.spt"</scriptWhenChecked> | ||
| + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
| + | <text>to colour the structure by Evolutionary Conservation</text> | ||
| + | </jmolCheckbox> | ||
| + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3gfz ConSurf]. | ||
| + | <div style="clear:both"></div> | ||
| - | == | + | ==See Also== |
| - | < | + | *[[Phosphodiesterase 3D structures|Phosphodiesterase 3D structures]] |
| - | [[Category: Klebsiella pneumoniae subsp. pneumoniae | + | __TOC__ |
| - | [[Category: Barends | + | </StructureSection> |
| - | [[Category: Beitlich | + | [[Category: Klebsiella pneumoniae subsp. pneumoniae MGH 78578]] |
| - | [[Category: Gomelsky | + | [[Category: Large Structures]] |
| - | [[Category: Griese | + | [[Category: Barends T]] |
| - | [[Category: Hartmann | + | [[Category: Beitlich T]] |
| - | [[Category: Kirienko | + | [[Category: Gomelsky M]] |
| - | [[Category: Reinstein | + | [[Category: Griese J]] |
| - | [[Category: Ryjenkov | + | [[Category: Hartmann E]] |
| - | [[Category: Schlichting | + | [[Category: Kirienko N]] |
| - | [[Category: Shoeman | + | [[Category: Reinstein J]] |
| - | + | [[Category: Ryjenkov D]] | |
| - | + | [[Category: Schlichting I]] | |
| - | + | [[Category: Shoeman R]] | |
| - | + | ||
| - | + | ||
Current revision
Klebsiella pneumoniae BlrP1 pH 6 manganese/cy-diGMP complex
| |||||||||||
