4j4r

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{{STRUCTURE_4j4r| PDB=4j4r | SCENE= }}
 
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===Hexameric SFTSVN===
 
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{{ABSTRACT_PUBMED_23576501}}
 
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==About this Structure==
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==Hexameric SFTSVN==
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[[4j4r]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Phlebovirus_js2010-018 Phlebovirus js2010-018]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4J4R OCA].
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<StructureSection load='4j4r' size='340' side='right'caption='[[4j4r]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[4j4r]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Phlebovirus_JS2010-018 Phlebovirus JS2010-018]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4J4R OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4J4R FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.9&#8491;</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4j4r FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4j4r OCA], [https://pdbe.org/4j4r PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4j4r RCSB], [https://www.ebi.ac.uk/pdbsum/4j4r PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4j4r ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/NCAP_SFTS NCAP_SFTS] Encapsidates the genomic RNA, protecting it from nucleases. Displays high affinity for single-stranded nucleic acid. The encapsidated genomic RNA is termed the nucleocapsid (NC) or ribonucleoprotein (By similarity). The ribonucleoprotein has a non-helical structure (By similarity). Serves as template for viral transcription and replication. After replication, the nucleocapsid is recruited to the host Golgi apparatus by glycoprotein Gn for packaging into virus particles (By similarity).[UniProtKB:D3K5I7][UniProtKB:F1BA48][UniProtKB:P21700]
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Severe fever with thrombocytopenia syndrome is an emerging infectious disease caused by a novel bunyavirus (SFTSV). Lack of vaccines and inadequate therapeutic treatments have made the spread of the virus a global concern. Viral nucleocapsid protein (N) is essential for its transcription and replication. Here, we present the crystal structures of N from SFTSV and its homologs from Buenaventura (BUE) and Granada (GRA) viruses. The structures reveal that phleboviral N folds into a compact core domain and an extended N-terminal arm that mediates oligomerization, such as tetramer, pentamer, and hexamer of N assemblies. Structural superimposition indicates that phleboviral N adopts a conserved architecture and uses a similar RNA encapsidation strategy as that of RVFV-N. The RNA binding cavity runs along the inner edge of the ring-like assembly. A triple mutant of SFTSV-N, R64D/K67D/K74D, almost lost its ability to bind RNA in vitro, is deficient in its ability to transcribe and replicate. Structural studies of the mutant reveal that both alterations in quaternary assembly and the charge distribution contribute to the loss of RNA binding. In the screening of inhibitors Suramin was identified to bind phleboviral N specifically. The complex crystal structure of SFTSV-N with Suramin was refined to a 2.30-A resolution. Suramin was found sitting in the putative RNA binding cavity of SFTSV-N. The inhibitory effect of Suramin on SFTSV replication was confirmed in Vero cells. Therefore, a common Suramin-based therapeutic approach targeting SFTSV-N and its homologs could be developed for containing phleboviral outbreaks.
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==Reference==
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Structure of severe Fever with thrombocytopenia syndrome virus nucleocapsid protein in complex with suramin reveals therapeutic potential.,Jiao L, Ouyang S, Liang M, Niu F, Shaw N, Wu W, Ding W, Jin C, Peng Y, Zhu Y, Zhang F, Wang T, Li C, Zuo X, Luan CH, Li D, Liu ZJ J Virol. 2013 Jun;87(12):6829-39. doi: 10.1128/JVI.00672-13. Epub 2013 Apr 10. PMID:23576501<ref>PMID:23576501</ref>
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<ref group="xtra">PMID:023576501</ref><references group="xtra"/><references/>
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[[Category: Phlebovirus js2010-018]]
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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[[Category: Ding, W.]]
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</div>
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[[Category: Jiao, L.]]
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<div class="pdbe-citations 4j4r" style="background-color:#fffaf0;"></div>
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[[Category: Jin, C.]]
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== References ==
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[[Category: Li, C.]]
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<references/>
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[[Category: Li, D.]]
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__TOC__
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[[Category: Liang, M.]]
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</StructureSection>
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[[Category: Liu, Z J.]]
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[[Category: Large Structures]]
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[[Category: Luan, C H.]]
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[[Category: Phlebovirus JS2010-018]]
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[[Category: Niu, F.]]
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[[Category: Ding W]]
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[[Category: Ouyang, S.]]
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[[Category: Jiao L]]
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[[Category: Shaw, N.]]
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[[Category: Jin C]]
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[[Category: Wang, T.]]
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[[Category: Li C]]
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[[Category: Wu, W.]]
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[[Category: Li D]]
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[[Category: Zhang, F.]]
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[[Category: Liang M]]
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[[Category: Zhu, Y.]]
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[[Category: Liu ZJ]]
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[[Category: Zuo, X.]]
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[[Category: Luan CH]]
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[[Category: Nucleocapsid]]
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[[Category: Niu F]]
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[[Category: Nucleocapsid protein]]
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[[Category: Ouyang S]]
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[[Category: Nucleoprotein]]
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[[Category: Shaw N]]
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[[Category: Viral protein]]
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[[Category: Wang T]]
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[[Category: Wu W]]
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[[Category: Zhang F]]
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[[Category: Zhu Y]]
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[[Category: Zuo X]]

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Hexameric SFTSVN

PDB ID 4j4r

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