This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2hfb

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (07:38, 17 March 2021) (edit) (undo)
 
(12 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2hfb.jpg|left|200px]]<br /><applet load="2hfb" size="350" color="white" frame="true" align="right" spinBox="true"
 
-
caption="2hfb, resolution 2.900&Aring;" />
 
-
'''Crystal structure of selenomethionine-labelled RafE from Streptococcus pneumoniae'''<br />
 
-
==About this Structure==
+
==Crystal structure of selenomethionine-labelled RafE from Streptococcus pneumoniae==
-
2HFB is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Streptococcus_pneumoniae Streptococcus pneumoniae] with <scene name='pdbligand=CL:'>CL</scene> as [http://en.wikipedia.org/wiki/ligand ligand]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2HFB OCA].
+
<StructureSection load='2hfb' size='340' side='right'caption='[[2hfb]], [[Resolution|resolution]] 2.90&Aring;' scene=''>
-
[[Category: Single protein]]
+
== Structural highlights ==
-
[[Category: Streptococcus pneumoniae]]
+
<table><tr><td colspan='2'>[[2hfb]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Strpn Strpn]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2HFB OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2HFB FirstGlance]. <br>
-
[[Category: Isaacs, N W.]]
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene></td></tr>
-
[[Category: Mitchell, T J.]]
+
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
[[Category: Paterson, N G.]]
+
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[2heu|2heu]]</div></td></tr>
-
[[Category: Riboldi-Tunnicliffe, A.]]
+
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">rafE ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=170187 STRPN])</td></tr>
-
[[Category: CL]]
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2hfb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2hfb OCA], [https://pdbe.org/2hfb PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2hfb RCSB], [https://www.ebi.ac.uk/pdbsum/2hfb PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2hfb ProSAT]</span></td></tr>
-
[[Category: periplasmic binding protein]]
+
</table>
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/hf/2hfb_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2hfb ConSurf].
 +
<div style="clear:both"></div>
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Feb 21 17:41:17 2008''
+
==See Also==
 +
*[[ABC transporter 3D structures|ABC transporter 3D structures]]
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Large Structures]]
 +
[[Category: Strpn]]
 +
[[Category: Isaacs, N W]]
 +
[[Category: Mitchell, T J]]
 +
[[Category: Paterson, N G]]
 +
[[Category: Riboldi-Tunnicliffe, A]]
 +
[[Category: Periplasmic binding protein]]
 +
[[Category: Sugar binding protein]]

Current revision

Crystal structure of selenomethionine-labelled RafE from Streptococcus pneumoniae

PDB ID 2hfb

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools