4dr8

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{{STRUCTURE_4dr8| PDB=4dr8 | SCENE= }}
 
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===Crystal structure of a peptide deformylase from Synechococcus elongatus===
 
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{{ABSTRACT_PUBMED_23407310}}
 
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==Function==
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==Crystal structure of a peptide deformylase from Synechococcus elongatus==
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[[http://www.uniprot.org/uniprot/Q5N5L5_SYNP6 Q5N5L5_SYNP6]] Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions (By similarity).[HAMAP-Rule:MF_00163]
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<StructureSection load='4dr8' size='340' side='right'caption='[[4dr8]], [[Resolution|resolution]] 1.55&Aring;' scene=''>
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== Structural highlights ==
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==About this Structure==
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<table><tr><td colspan='2'>[[4dr8]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Synechococcus_elongatus_PCC_6301 Synechococcus elongatus PCC 6301]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4DR8 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4DR8 FirstGlance]. <br>
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[[4dr8]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Synechococcus_elongatus_pcc_6301 Synechococcus elongatus pcc 6301]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4DR8 OCA].
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.55&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=FMT:FORMIC+ACID'>FMT</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
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==Reference==
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4dr8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4dr8 OCA], [https://pdbe.org/4dr8 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4dr8 RCSB], [https://www.ebi.ac.uk/pdbsum/4dr8 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4dr8 ProSAT]</span></td></tr>
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<ref group="xtra">PMID:023407310</ref><references group="xtra"/><references/>
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</table>
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[[Category: Peptide deformylase]]
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== Function ==
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[[Category: Synechococcus elongatus pcc 6301]]
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[https://www.uniprot.org/uniprot/A0A0H3JZJ4_SYNP6 A0A0H3JZJ4_SYNP6] Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.[HAMAP-Rule:MF_00163]
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[[Category: Abendroth, J.]]
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__TOC__
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[[Category: Burgin, A.]]
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</StructureSection>
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[[Category: Craig, T.]]
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[[Category: Large Structures]]
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[[Category: Lorimer, D.]]
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[[Category: Synechococcus elongatus PCC 6301]]
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[[Category: Rohwer, F.]]
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[[Category: Abendroth J]]
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[[Category: Segall, A.]]
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[[Category: Burgin A]]
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[[Category: Hydrolase]]
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[[Category: Craig T]]
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[[Category: Lorimer D]]
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[[Category: Rohwer F]]
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[[Category: Segall A]]

Current revision

Crystal structure of a peptide deformylase from Synechococcus elongatus

PDB ID 4dr8

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