3zoj

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (11:08, 20 December 2023) (edit) (undo)
 
(4 intermediate revisions not shown.)
Line 1: Line 1:
-
{{STRUCTURE_3zoj| PDB=3zoj | SCENE= }}
 
-
===High-resolution structure of Pichia Pastoris aquaporin Aqy1 at 0.88 A===
 
-
{{ABSTRACT_PUBMED_23766328}}
 
-
==About this Structure==
+
==High-resolution structure of Pichia Pastoris aquaporin Aqy1 at 0.88 A==
-
[[3zoj]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3ZOJ OCA].
+
<StructureSection load='3zoj' size='340' side='right'caption='[[3zoj]], [[Resolution|resolution]] 0.88&Aring;' scene=''>
 +
== Structural highlights ==
 +
<table><tr><td colspan='2'>[[3zoj]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Komagataella_pastoris Komagataella pastoris]. The May 2014 RCSB PDB [https://pdb.rcsb.org/pdb/static.do?p=education_discussion/molecule_of_the_month/index.html Molecule of the Month] feature on ''Aquaporin'' by David Goodsell is [https://dx.doi.org/10.2210/rcsb_pdb/mom_2014_5 10.2210/rcsb_pdb/mom_2014_5]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3ZOJ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3ZOJ FirstGlance]. <br>
 +
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 0.88&#8491;</td></tr>
 +
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BOG:B-OCTYLGLUCOSIDE'>BOG</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3zoj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3zoj OCA], [https://pdbe.org/3zoj PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3zoj RCSB], [https://www.ebi.ac.uk/pdbsum/3zoj PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3zoj ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/F2QVG4_KOMPC F2QVG4_KOMPC]
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
Aquaporins are membrane channels that facilitate the flow of water across biological membranes. Two conserved regions are central for selective function: the dual asparagine-proline-alanine (NPA) aquaporin signature motif and the aromatic and arginine selectivity filter (SF). Here, we present the crystal structure of a yeast aquaporin at 0.88 angstrom resolution. We visualize the H-bond donor interactions of the NPA motif's asparagine residues to passing water molecules; observe a polarized water-water H-bond configuration within the channel; assign the tautomeric states of the SF histidine and arginine residues; and observe four SF water positions too closely spaced to be simultaneously occupied. Strongly correlated movements break the connectivity of SF waters to other water molecules within the channel and prevent proton transport via a Grotthuss mechanism.
-
==Reference==
+
Subangstrom resolution X-ray structure details aquaporin-water interactions.,Kosinska Eriksson U, Fischer G, Friemann R, Enkavi G, Tajkhorshid E, Neutze R Science. 2013 Jun 14;340(6138):1346-9. doi: 10.1126/science.1234306. PMID:23766328<ref>PMID:23766328</ref>
-
<ref group="xtra">PMID:023766328</ref><references group="xtra"/><references/>
+
 
-
[[Category: Enkavi, G.]]
+
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-
[[Category: Fischer, G.]]
+
</div>
-
[[Category: Friemann, R.]]
+
<div class="pdbe-citations 3zoj" style="background-color:#fffaf0;"></div>
-
[[Category: Kosinska-Eriksson, U.]]
+
 
-
[[Category: Neutze, R.]]
+
==See Also==
-
[[Category: Tajkhorshid, E.]]
+
*[[Aquaporin 3D structures|Aquaporin 3D structures]]
-
[[Category: Channel]]
+
== References ==
-
[[Category: Membrane protein]]
+
<references/>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Aquaporin]]
 +
[[Category: Komagataella pastoris]]
 +
[[Category: Large Structures]]
 +
[[Category: RCSB PDB Molecule of the Month]]
 +
[[Category: Enkavi G]]
 +
[[Category: Fischer G]]
 +
[[Category: Friemann R]]
 +
[[Category: Kosinska-Eriksson U]]
 +
[[Category: Neutze R]]
 +
[[Category: Tajkhorshid E]]

Current revision

High-resolution structure of Pichia Pastoris aquaporin Aqy1 at 0.88 A

PDB ID 3zoj

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools