3dhv

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{{STRUCTURE_3dhv| PDB=3dhv | SCENE= }}
 
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===Crystal structure of DltA protein in complex with D-alanine adenylate===
 
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{{ABSTRACT_PUBMED_18847223}}
 
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==Function==
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==Crystal structure of DltA protein in complex with D-alanine adenylate==
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[[http://www.uniprot.org/uniprot/DLTA_BACCR DLTA_BACCR]] Involved in the biosynthesis of D-alanyl-lipoteichoic acid (LTA). Catalyzes an ATP-dependent two-step reaction where it forms a high energy D-alanyl AMP intermediate and transfers the alanyl residues from AMP to Dcp (By similarity).
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<StructureSection load='3dhv' size='340' side='right'caption='[[3dhv]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[3dhv]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_cereus_ATCC_14579 Bacillus cereus ATCC 14579]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DHV OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3DHV FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=AMP:ADENOSINE+MONOPHOSPHATE'>AMP</scene>, <scene name='pdbligand=DAL:D-ALANINE'>DAL</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3dhv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dhv OCA], [https://pdbe.org/3dhv PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3dhv RCSB], [https://www.ebi.ac.uk/pdbsum/3dhv PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3dhv ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/DLTA_BACCR DLTA_BACCR] Involved in the biosynthesis of D-alanyl-lipoteichoic acid (LTA). Catalyzes an ATP-dependent two-step reaction where it forms a high energy D-alanyl AMP intermediate and transfers the alanyl residues from AMP to Dcp (By similarity).
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dh/3dhv_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3dhv ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Ubiquitous D-alanylation of lipoteichoic acids modulates the surface charge and ligand binding of the gram-positive cell wall. Disruption of the bacterial DltABCD gene involved in teichoic acid alanylation, as well as inhibition of the DltA protein, has been shown to increase a gram-positive bacterium's susceptibility to antibiotics. The DltA D-alanyl carrier protein ligase promotes a two-step process starting with adenylation of D-alanine. We have determined the 2.0 A resolution crystal structure of a DltA protein from Bacillus cereus in complex with the D-alanine adenylate intermediate of the first reaction. Despite the low level of sequence similarity, the DltA structure resembles known structures of adenylation domains such as the acetyl-CoA synthetase. The enantiomer selection appears to be enhanced by the medium-sized side chain of Cys-269. The Ala-269 mutant protein shows marked loss of such selection. The network of noncovalent interactions between the D-alanine adenylate and DltA provides structure-based rationale for aiding the design of tight-binding DltA inhibitors for combating infectious gram-positive bacteria such as the notorious methicillin-resistant Staphylococcus aureus.
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==About this Structure==
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Crystal structure and enantiomer selection by D-alanyl carrier protein ligase DltA from Bacillus cereus.,Du L, He Y, Luo Y Biochemistry. 2008 Nov 4;47(44):11473-80. Epub 2008 Oct 11. PMID:18847223<ref>PMID:18847223</ref>
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[[3dhv]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Bacillus_cereus_atcc_14579 Bacillus cereus atcc 14579]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DHV OCA].
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==Reference==
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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<ref group="xtra">PMID:018847223</ref><references group="xtra"/><references/>
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</div>
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[[Category: Bacillus cereus atcc 14579]]
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<div class="pdbe-citations 3dhv" style="background-color:#fffaf0;"></div>
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[[Category: Du, L.]]
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== References ==
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[[Category: He, Y.]]
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<references/>
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[[Category: Luo, Y.]]
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__TOC__
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[[Category: Adenylation]]
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</StructureSection>
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[[Category: Amp-forming domain]]
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[[Category: Bacillus cereus ATCC 14579]]
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[[Category: D-alanine]]
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[[Category: Large Structures]]
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[[Category: D-alanine carrier protein ligase]]
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[[Category: Du L]]
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[[Category: Dlta]]
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[[Category: He Y]]
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[[Category: Ligase]]
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[[Category: Luo Y]]

Current revision

Crystal structure of DltA protein in complex with D-alanine adenylate

PDB ID 3dhv

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