2i48

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (09:01, 21 February 2024) (edit) (undo)
 
(13 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2i48.gif|left|200px]]<br /><applet load="2i48" size="350" color="white" frame="true" align="right" spinBox="true"
 
-
caption="2i48, resolution 1.60&Aring;" />
 
-
'''Crystal structure of Bicarbonate Transport Protein CmpA from Synechocystis sp. PCC 6803 in complex with carbonic acid'''<br />
 
-
==Overview==
+
==Crystal structure of Bicarbonate Transport Protein CmpA from Synechocystis sp. PCC 6803 in complex with carbonic acid==
-
Cyanobacteria, blue-green algae, are the most abundant autotrophs in aquatic environments and form the base of the food chain by fixing carbon and nitrogen into cellular biomass. To compensate for the low selectivity of Rubisco for CO2 over O2, cyanobacteria have developed highly efficient CO2-concentrating machinery of which the ABC transport system CmpABCD from Synechocystis PCC 6803 is one component. Here, we have described the structure of the bicarbonate-binding protein CmpA in the absence and presence of bicarbonate and carbonic acid. CmpA is highly homologous to the nitrate transport protein NrtA. CmpA binds carbonic acid at the entrance to the ligand-binding pocket, whereas bicarbonate binds in nearly an identical location compared with nitrate binding to NrtA. Unexpectedly, bicarbonate binding is accompanied by a metal ion, identified as Ca2+ via inductively coupled plasma optical emission spectrometry. The binding of bicarbonate and metal appears to be highly cooperative and suggests that CmpA may co-transport bicarbonate and calcium or that calcium acts a cofactor in bicarbonate transport.
+
<StructureSection load='2i48' size='340' side='right'caption='[[2i48]], [[Resolution|resolution]] 1.60&Aring;' scene=''>
-
 
+
== Structural highlights ==
-
==About this Structure==
+
<table><tr><td colspan='2'>[[2i48]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Synechocystis_sp._PCC_6803 Synechocystis sp. PCC 6803]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2I48 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2I48 FirstGlance]. <br>
-
2I48 is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Synechocystis_sp. Synechocystis sp.] with <scene name='pdbligand=CO3:'>CO3</scene> as [http://en.wikipedia.org/wiki/ligand ligand]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2I48 OCA].
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.6&#8491;</td></tr>
-
 
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CO3:CARBONATE+ION'>CO3</scene></td></tr>
-
==Reference==
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2i48 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2i48 OCA], [https://pdbe.org/2i48 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2i48 RCSB], [https://www.ebi.ac.uk/pdbsum/2i48 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2i48 ProSAT]</span></td></tr>
-
The structure of a cyanobacterial bicarbonate transport protein, CmpA., Koropatkin NM, Koppenaal DW, Pakrasi HB, Smith TJ, J Biol Chem. 2007 Jan 26;282(4):2606-14. Epub 2006 Nov 22. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=17121816 17121816]
+
</table>
-
[[Category: Single protein]]
+
== Function ==
-
[[Category: Synechocystis sp.]]
+
[https://www.uniprot.org/uniprot/CMPA_SYNY3 CMPA_SYNY3] Part of the ABC transporter complex CmpABCD involved in bicarbonate transport. Binds bicarbonate with high affinity (By similarity).
-
[[Category: Koropatkin, N M.]]
+
== Evolutionary Conservation ==
-
[[Category: Pakrasi, H B.]]
+
[[Image:Consurf_key_small.gif|200px|right]]
-
[[Category: Smith, T J.]]
+
Check<jmol>
-
[[Category: CO3]]
+
<jmolCheckbox>
-
[[Category: abc transporter]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/i4/2i48_consurf.spt"</scriptWhenChecked>
-
[[Category: alpha-beta protein]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: bicarbonate-binding protein]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: c-clamp]]
+
</jmolCheckbox>
-
[[Category: periplasmic solute-binding protein]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2i48 ConSurf].
-
 
+
<div style="clear:both"></div>
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Feb 21 17:48:50 2008''
+
__TOC__
 +
</StructureSection>
 +
[[Category: Large Structures]]
 +
[[Category: Synechocystis sp. PCC 6803]]
 +
[[Category: Koropatkin NM]]
 +
[[Category: Pakrasi HB]]
 +
[[Category: Smith TJ]]

Current revision

Crystal structure of Bicarbonate Transport Protein CmpA from Synechocystis sp. PCC 6803 in complex with carbonic acid

PDB ID 2i48

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/2i48"
Personal tools