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| - | <StructureSection load='1uak' size='350' side='right' caption='Structure of tRNA methyltransferase for N1 of guanine 37 complex with SAH (PDB entry [[1uak]])' scene=''> | + | <StructureSection load='' size='350' side='right' caption='Structure of tRNA methyltransferase for N1 of guanine 37 complex with S-adenosylhomocysteine (PDB entry [[1uak]])' scene='55/553109/Cv/1'> |
| - | | + | __TOC__ |
| - | '''tRNA methyltransferase''' (Trm) methylates specific positions on tRNA. tRNA methylation is a post-transcription modification. The methyl donor is S-adenosylmethionine (SAM) and the product is the methylated tRNA and S-adenosylhomocysteine (SAH). S-adenosylornithine or sinefugin (SFG) is an inhibitor of the reaction. | + | == Function == |
| | + | '''tRNA methyltransferase''' ('''Trm''') methylates specific positions on tRNA. tRNA methylation is a post-transcription modification. The methyl donor is S-adenosylmethionine (SAM) and the product is the methylated tRNA and S-adenosylhomocysteine (SAH)<ref>PMID:25626150</ref>. S-adenosylornithine or sinefugin (SFG) is an inhibitor of the reaction. |
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| | For details on Trm to N2 of guanine 6 see [[TRNA:m2G6 methyltransferase TrmN/Trm14]]. | | For details on Trm to N2 of guanine 6 see [[TRNA:m2G6 methyltransferase TrmN/Trm14]]. |
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| | + | *'''Dual specificity tRNA methyltransferase Rlmn''' is an ''E. coli'' methyltransferase which modifies both ribosomal 23S RNA and tRNA<ref>PMID:22891362</ref>. |
| | + | *'''METTL6''' modifies cytidine 32<ref>PMId:32923617</ref>. |
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| | + | == Structural highlights == |
| | + | Trm <scene name='55/553109/Cv/4'>active site</scene> is located at the cleft at the subunit interface<ref>PMID:12773376</ref>. Water molecules are shown as red spheres. |
| | ==3D structures of tRNA methyltransferase== | | ==3D structures of tRNA methyltransferase== |
| | + | [[tRNA methyltransferase 3D structures]] |
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| - | Updated on {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}}
| + | == References == |
| - | | + | <references/> |
| - | '''Trm to N1 of guanine 37'''
| + | </StructureSection> |
| - | | + | [[Category:Topic Page]] |
| - | [[3knu]] – ApTrm – ''Anaplasma phagocytophilum'' <br />
| + | |
| - | [[1oy5]] – AaTrm – ''Aquifex aeolicus'' <br />
| + | |
| - | [[3ief]] – Trm – ''Bartonella henselae'' <br /> | + | |
| - | [[1uaj]] – HiTrm – ''haemophilus influenzae''<br />
| + | |
| - | [[3ky7]] – Trm – ''Staphylococcus aureus''<br />
| + | |
| - | [[3quv]] – Trm – ''Mycobacterium abscessus''<br />
| + | |
| - | | + | |
| - | ''Complexes of Trm to N1 of guanine 37''
| + | |
| - | | + | |
| - | [[1uak]] – HiTrm + SAM <br />
| + | |
| - | [[1ual]], [[1uam]] – HiTrm + SAH <br />
| + | |
| - | [[3axz]] – HiTrm + adenosine<br />
| + | |
| - | [[1p9p]] – EcTrm + SAH – ''Escherichia coli'' <br />
| + | |
| - | [[2yx1]] – MjTrm + SFG – ''Methanocalcococcus jannaschii''<br />
| + | |
| - | [[3ay0]] – MjTrm + adenosine<br />
| + | |
| - | [[4h3y]], [[4h3z]] – Trm + SAH – ''Burkholderia phymatum'' <br />
| + | |
| - | [[4ig6]] – ApTrm + SAH <br />
| + | |
| - | [[4gek]], [[4iwn]] – EcTrm + SAM derivative<br />
| + | |
| - | | + | |
| - | '''Trm to N7 of guanine 46'''
| + | |
| - | | + | |
| - | [[1yzh]] – Trm – ''Streptococcus pneumoniae'' <br />
| + | |
| - | [[2fca]] – Trm – ''Bacillus subtilis'' <br />
| + | |
| - | [[2vdu]] – Trm – yeast <br />
| + | |
| - | [[3dxx]] – EcTrm <br />
| + | |
| - | | + | |
| - | ''Complexes of Trm to N7 of guanine 46''
| + | |
| - | | + | |
| - | [[3ckk]] – Trm + SAM - human<br />
| + | |
| - | [[3dxy]] – EcTrm + SAM <br />
| + | |
| - | [[3dxz]] – EcTrm + SAH <br />
| + | |
| - | | + | |
| - | '''Trm to O2 of cytidine 34'''
| + | |
| - | | + | |
| - | [[3e5y]] – BpTrm – ''Burkholderia pseudomalllei'' <br />
| + | |
| - | | + | |
| - | ''Complexes of Trm to O2 of cytidine 34''
| + | |
| - | | + | |
| - | [[4kgn]] – BpTrm + SAH <br />
| + | |
| - | [[3n4k]], [[3n4j]] – Trm + SAH – ''Yersinia pestis'' <br />
| + | |
| - | [[1mxi]], [[1im8]] – HiTrm + SAH <br />
| + | |
| - | | + | |
| - | '''Trm to N2 of guanine 6'''
| + | |
| - | | + | |
| - | [[3tm5]] – Trm + SFG – ''Pyrococcvus furiosus''<br />
| + | |
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Function
tRNA methyltransferase (Trm) methylates specific positions on tRNA. tRNA methylation is a post-transcription modification. The methyl donor is S-adenosylmethionine (SAM) and the product is the methylated tRNA and S-adenosylhomocysteine (SAH)[1]. S-adenosylornithine or sinefugin (SFG) is an inhibitor of the reaction.
For details on Trm to N2 of guanine 6 see TRNA:m2G6 methyltransferase TrmN/Trm14.
- Dual specificity tRNA methyltransferase Rlmn is an E. coli methyltransferase which modifies both ribosomal 23S RNA and tRNA[2].
- METTL6 modifies cytidine 32[3].
Structural highlights
Trm is located at the cleft at the subunit interface[4]. Water molecules are shown as red spheres.
3D structures of tRNA methyltransferase
tRNA methyltransferase 3D structures
References
- ↑ Swinehart WE, Jackman JE. Diversity in mechanism and function of tRNA methyltransferases. RNA Biol. 2015;12(4):398-411. doi: 10.1080/15476286.2015.1008358. PMID:25626150 doi:http://dx.doi.org/10.1080/15476286.2015.1008358
- ↑ Benitez-Paez A, Villarroya M, Armengod ME. The Escherichia coli RlmN methyltransferase is a dual-specificity enzyme that modifies both rRNA and tRNA and controls translational accuracy. RNA. 2012 Oct;18(10):1783-95. doi: 10.1261/rna.033266.112. Epub 2012 Aug 13. PMID:22891362 doi:http://dx.doi.org/10.1261/rna.033266.112
- ↑ Ignatova VV, Kaiser S, Ho JSY, Bing X, Stolz P, Tan YX, Lee CL, Gay FPH, Lastres PR, Gerlini R, Rathkolb B, Aguilar-Pimentel A, Sanz-Moreno A, Klein-Rodewald T, Calzada-Wack J, Ibragimov E, Valenta M, Lukauskas S, Pavesi A, Marschall S, Leuchtenberger S, Fuchs H, Gailus-Durner V, de Angelis MH, Bultmann S, Rando OJ, Guccione E, Kellner SM, Schneider R. METTL6 is a tRNA m(3)C methyltransferase that regulates pluripotency and tumor cell growth. Sci Adv. 2020 Aug 26;6(35):eaaz4551. PMID:32923617 doi:10.1126/sciadv.aaz4551
- ↑ Ahn HJ, Kim HW, Yoon HJ, Lee BI, Suh SW, Yang JK. Crystal structure of tRNA(m1G37)methyltransferase: insights into tRNA recognition. EMBO J. 2003 Jun 2;22(11):2593-603. PMID:12773376 doi:10.1093/emboj/cdg269
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