This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
4edv
From Proteopedia
(Difference between revisions)
| (4 intermediate revisions not shown.) | |||
| Line 1: | Line 1: | ||
| - | {{STRUCTURE_4edv| PDB=4edv | SCENE= }} | ||
| - | ===The structure of the S. aureus DnaG RNA Polymerase Domain bound to pppGpp and Manganese=== | ||
| - | {{ABSTRACT_PUBMED_22795082}} | ||
| - | == | + | ==The structure of the S. aureus DnaG RNA Polymerase Domain bound to pppGpp and Manganese== |
| - | [[ | + | <StructureSection load='4edv' size='340' side='right'caption='[[4edv]], [[Resolution|resolution]] 2.01Å' scene=''> |
| - | + | == Structural highlights == | |
| - | == | + | <table><tr><td colspan='2'>[[4edv]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Staphylococcus_aureus Staphylococcus aureus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4EDV OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4EDV FirstGlance]. <br> |
| - | [[4edv]] is a 1 chain structure with sequence from [ | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.01Å</td></tr> |
| + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=0O2:GUANOSINE+5-(TETRAHYDROGEN+TRIPHOSPHATE)+3-(TRIHYDROGEN+DIPHOSPHATE)'>0O2</scene>, <scene name='pdbligand=BEN:BENZAMIDINE'>BEN</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene></td></tr> | ||
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4edv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4edv OCA], [https://pdbe.org/4edv PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4edv RCSB], [https://www.ebi.ac.uk/pdbsum/4edv PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4edv ProSAT]</span></td></tr> | ||
| + | </table> | ||
| + | == Function == | ||
| + | [https://www.uniprot.org/uniprot/DNAG_STAAU DNAG_STAAU] RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication.[HAMAP-Rule:MF_00974] | ||
==See Also== | ==See Also== | ||
| - | *[[RNA polymerase|RNA polymerase]] | + | *[[RNA polymerase 3D structures|RNA polymerase 3D structures]] |
| - | + | __TOC__ | |
| - | + | </StructureSection> | |
| - | < | + | [[Category: Large Structures]] |
[[Category: Staphylococcus aureus]] | [[Category: Staphylococcus aureus]] | ||
| - | [[Category: Berger | + | [[Category: Berger JM]] |
| - | [[Category: Chu | + | [[Category: Chu C]] |
| - | [[Category: Corn | + | [[Category: Corn JE]] |
| - | [[Category: Rymer | + | [[Category: Rymer RU]] |
| - | [[Category: Solorio | + | [[Category: Solorio FA]] |
| - | [[Category: Wang | + | [[Category: Wang JD]] |
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
Current revision
The structure of the S. aureus DnaG RNA Polymerase Domain bound to pppGpp and Manganese
| |||||||||||
