2idb

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:12, 30 October 2024) (edit) (undo)
 
(14 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2idb.jpg|left|200px]]<br /><applet load="2idb" size="350" color="white" frame="true" align="right" spinBox="true"
 
-
caption="2idb, resolution 2.90&Aring;" />
 
-
'''Crystal Structure of 3-octaprenyl-4-hydroxybenzoate decarboxylase (UbiD) from Escherichia coli, Northeast Structural Genomics Target ER459.'''<br />
 
-
==About this Structure==
+
==Crystal Structure of 3-octaprenyl-4-hydroxybenzoate decarboxylase (UbiD) from Escherichia coli, Northeast Structural Genomics Target ER459.==
-
2IDB is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Escherichia_coli_k12 Escherichia coli k12] with <scene name='pdbligand=1PE:'>1PE</scene> and <scene name='pdbligand=EDO:'>EDO</scene> as [http://en.wikipedia.org/wiki/ligands ligands]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2IDB OCA].
+
<StructureSection load='2idb' size='340' side='right'caption='[[2idb]], [[Resolution|resolution]] 2.90&Aring;' scene=''>
-
[[Category: Escherichia coli k12]]
+
== Structural highlights ==
-
[[Category: Single protein]]
+
<table><tr><td colspan='2'>[[2idb]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli_K-12 Escherichia coli K-12]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2IDB OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2IDB FirstGlance]. <br>
-
[[Category: Acton, T B.]]
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.9&#8491;</td></tr>
-
[[Category: Chen, C X.]]
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=1PE:PENTAETHYLENE+GLYCOL'>1PE</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
[[Category: Cunningham, K.]]
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2idb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2idb OCA], [https://pdbe.org/2idb PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2idb RCSB], [https://www.ebi.ac.uk/pdbsum/2idb PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2idb ProSAT], [https://www.topsan.org/Proteins/NESGC/2idb TOPSAN]</span></td></tr>
-
[[Category: Fang, Y.]]
+
</table>
-
[[Category: Forouhar, F.]]
+
== Function ==
-
[[Category: Hunt, J F.]]
+
[https://www.uniprot.org/uniprot/UBID_ECOLI UBID_ECOLI] Catalyzes the decarboxylation of 3-octaprenyl-4-hydroxy benzoate to 2-octaprenylphenol.[HAMAP-Rule:MF_01636]
-
[[Category: Ma, L C.]]
+
== Evolutionary Conservation ==
-
[[Category: Montelione, G T.]]
+
[[Image:Consurf_key_small.gif|200px|right]]
-
[[Category: NESG, Northeast Structural Genomics Consortium.]]
+
Check<jmol>
-
[[Category: Seetharaman, J]]
+
<jmolCheckbox>
-
[[Category: Tong, L.]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/id/2idb_consurf.spt"</scriptWhenChecked>
-
[[Category: Xiao, R.]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
-
[[Category: Zhou, W.]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: 1PE]]
+
</jmolCheckbox>
-
[[Category: EDO]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2idb ConSurf].
-
[[Category: alpha-beta protein]]
+
<div style="clear:both"></div>
-
[[Category: nesg]]
+
__TOC__
-
[[Category: northeast structural genomics consortium]]
+
</StructureSection>
-
[[Category: protein structure initiative]]
+
[[Category: Escherichia coli K-12]]
-
[[Category: psi-2]]
+
[[Category: Large Structures]]
-
[[Category: structural genomics]]
+
[[Category: Acton TB]]
-
 
+
[[Category: Chen CX]]
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Feb 21 17:51:29 2008''
+
[[Category: Cunningham K]]
 +
[[Category: Fang Y]]
 +
[[Category: Forouhar F]]
 +
[[Category: Hunt JF]]
 +
[[Category: Ma L-C]]
 +
[[Category: Montelione GT]]
 +
[[Category: Seetharaman J]]
 +
[[Category: Tong L]]
 +
[[Category: Xiao R]]
 +
[[Category: Zhou W]]

Current revision

Crystal Structure of 3-octaprenyl-4-hydroxybenzoate decarboxylase (UbiD) from Escherichia coli, Northeast Structural Genomics Target ER459.

PDB ID 2idb

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/2idb"
Personal tools