G14secL04Tpc3
From Proteopedia
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+ | <StructureSection load='1p4p' size='350' side='right' scene='G14secL04Tpc3/Free_ospb_colored/2' caption='Lyme disease spirochete outer surface protein B C-terminal (PDB code [[1p4p]])'> | ||
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== Lyme Disease and OspB protein== | == Lyme Disease and OspB protein== | ||
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===Symptoms and Origin of Lyme disease=== | ===Symptoms and Origin of Lyme disease=== | ||
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==Free OspB structure== | ==Free OspB structure== | ||
- | <Structure load='1p4p' size='350' frame='true' align='right' caption='Free OspB (PDB code [[1p4p]])' scene = 'G14secL04Tpc3/Free_ospb_colored/2'/> | ||
<scene name='G14secL04Tpc3/Free_ospb_colored/2'>Free OspB</scene> structure consists of twelve anti-parallel beta-strands followed by a single alpha helix. <scene name='G14secL04Tpc3/5-7_beta_strands_showing5/1'>Beta strands 5-7</scene> | <scene name='G14secL04Tpc3/Free_ospb_colored/2'>Free OspB</scene> structure consists of twelve anti-parallel beta-strands followed by a single alpha helix. <scene name='G14secL04Tpc3/5-7_beta_strands_showing5/1'>Beta strands 5-7</scene> | ||
and <scene name='G14secL04Tpc3/8-12_beta_strands_showing5/1'>8-12 </scene>form two sheets that bend, along with the final <scene name='G14secL04Tpc3/Alpha_helix2/1'>alpha helix </scene> | and <scene name='G14secL04Tpc3/8-12_beta_strands_showing5/1'>8-12 </scene>form two sheets that bend, along with the final <scene name='G14secL04Tpc3/Alpha_helix2/1'>alpha helix </scene> | ||
- | that comes over the top into the <scene name='G14secL04Tpc3/C-terminal_barrel_domain/5'>C terminal barrel domain</scene> | + | that comes over the top into the <scene name='G14secL04Tpc3/C-terminal_barrel_domain/5'>C terminal barrel domain</scene>. It has been shown that OspB deficient spirochetes lack the ability to bind to the tick gut <ref name ="critical" />. Further studies suggest that the structural barrel domain is what gives OspB the ability to adhere to the tick gut wall <ref name="1rjl_pdb" />. The barrel domain cavity could serve as the binding site for an exposed protein loop, small peptide, or linear saccharide hanging off the tick gut wall<ref name="1rjl_pdb" />. <scene name='G14secL04Tpc3/1-4_beta_strands_showing3/2'>Beta strands 1-4</scene> on free OspB's N-terminus are cleaved when OspB is bound to antibody fragment H6831, suggesting that they're removed by proteolysis in the H6831-bound complex<ref name = "1rjl_pdb" />. The OspB protein is an integral membrane lipoprotein, with its lipidated N-terminus imbedded in the outer membrane of the spirochete and its C-terminus directed away from the membrane<ref>M E Brandt, B S Riley, J D Radolf and M V Norgard. Immunogenic integral membrane proteins of ''Borrelia burgdorferi'' are lipoproteins Infect. Immun. 1990, 58(4):983. http://iai.asm.org/content/58/4/983.short</ref>. Therefore, it is speculated that proteolytic action on these N-terminus beta strands somehow cause lysis of the spirochete. Studies have shown that when complement-independent antibodies such as H6831 and CB2 act on OspB, the result is [http://en.wikipedia.org/wiki/Blebbing blebbing] of the outer membrane of the bacteria <ref name="Blebbing">Timothy J. LaRocca, David J. Holthausen, Chyongere Hsieh, Christian Renken, Carmen A. Mannella, Jorge L. Benach and Arturo Casadevall |
- | . It has been shown that OspB deficient spirochetes lack the ability to bind to the tick gut <ref name ="critical" />. Further studies suggest that the structural barrel domain is what gives OspB the ability to adhere to the tick gut wall <ref name="1rjl_pdb" />. The barrel domain cavity could serve as the binding site for an exposed protein loop, small peptide, or linear saccharide hanging off the tick gut wall<ref name="1rjl_pdb" />. <scene name='G14secL04Tpc3/1-4_beta_strands_showing3/2'>Beta strands 1-4</scene> on free OspB's N-terminus are cleaved when OspB is bound to antibody fragment H6831, suggesting that they're removed by proteolysis in the H6831-bound complex<ref name = "1rjl_pdb" />. The OspB protein is an integral membrane lipoprotein, with its lipidated N-terminus imbedded in the outer membrane of the spirochete and its C-terminus directed away from the membrane<ref>M E Brandt, B S Riley, J D Radolf and M V Norgard. Immunogenic integral membrane proteins of ''Borrelia burgdorferi'' are lipoproteins Infect. Immun. 1990, 58(4):983. http://iai.asm.org/content/58/4/983.short</ref>. Therefore, it is speculated that proteolytic action on these N-terminus beta strands somehow cause lysis of the spirochete. Studies have shown that when complement-independent antibodies such as H6831 and CB2 act on OspB, the result is [http://en.wikipedia.org/wiki/Blebbing blebbing] of the outer membrane of the bacteria <ref name="Blebbing">Timothy J. LaRocca, David J. Holthausen, Chyongere Hsieh, Christian Renken, Carmen A. Mannella, Jorge L. Benach and Arturo Casadevall | + | |
Proceedings of the National Academy of Sciences of the United States of America , Vol. 106, No. 26 (Jun. 30, 2009), pp. 10752-10757 | Proceedings of the National Academy of Sciences of the United States of America , Vol. 106, No. 26 (Jun. 30, 2009), pp. 10752-10757 | ||
http://www.jstor.org/stable/40483625?&Search=yes&searchText=region&searchText=antibody&searchText=protein&searchText=directed&searchText=bactericidal&searchText=Borrelia&searchText=variable&searchText=burgdorferi&searchText=OspB&list=hide&searchUri=%2Faction%2FdoBasicSearch%3FQuery%3D%2BA%2Bbactericidal%2Bantibody%2Bto%2BBorrelia%2Bburgdorferi%2Bis%2Bdirected%2Bagainst%2Ba%2Bvariable%2Bregion%2Bof%2Bthe%2BOspB%2Bprotein%26acc%3Don%26wc%3Don&prevSearch=&item=3&ttl=7&returnArticleService=showFullText</ref>. This blebbing of the bacterial membrane has been shown to create small openings in the outer membrane of the bacteria, which leads for potential osmotic lysis depending on the solution the bacteria is in<ref name="Blebbing" />. | http://www.jstor.org/stable/40483625?&Search=yes&searchText=region&searchText=antibody&searchText=protein&searchText=directed&searchText=bactericidal&searchText=Borrelia&searchText=variable&searchText=burgdorferi&searchText=OspB&list=hide&searchUri=%2Faction%2FdoBasicSearch%3FQuery%3D%2BA%2Bbactericidal%2Bantibody%2Bto%2BBorrelia%2Bburgdorferi%2Bis%2Bdirected%2Bagainst%2Ba%2Bvariable%2Bregion%2Bof%2Bthe%2BOspB%2Bprotein%26acc%3Don%26wc%3Don&prevSearch=&item=3&ttl=7&returnArticleService=showFullText</ref>. This blebbing of the bacterial membrane has been shown to create small openings in the outer membrane of the bacteria, which leads for potential osmotic lysis depending on the solution the bacteria is in<ref name="Blebbing" />. | ||
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==OspB complexed with H6831 Antibody Fab Fragment== | ==OspB complexed with H6831 Antibody Fab Fragment== | ||
+ | <scene name='G14secL04Tpc3/Ospb_in_complex/2'>OspB bound to H6831 </scene> (PDB code [[1rjl]]). | ||
- | <Structure load='1rjl' size='350' frame='true' align='right' caption= 'OspB bound to H6831 (PDB code [[1rjl]])' scene= 'G14secL04Tpc3/Ospb_in_complex/2'/> | ||
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<scene name='G14secL04Tpc3/Antibody_showing2/1'>Antibody Fab fragment H6831 </scene> (<scene name='G14secL04Tpc3/Heavy_chain/1'>Heavy chain</scene> and <scene name='G14secL04Tpc3/Light_chain/1'>light chain</scene>) has been shown to bind on an epitope of the <scene name='G14secL04Tpc3/Ospb_in_complex_with_heavy_and/2'>OspB protein</scene><ref name ="1rjl_pdb" />. Once this occurs, the resulting OspB∙H6831 complex is formed and the first four beta strands of the OspB protein are proteolysed<ref name ="1rjl_pdb" />. Cleavage of these first four beta strands somehow causes bacterial lysis of the ''B. burdgorferi''. This loss is the most significant conformational change in the OspB protein itself, and all other changes are minor and appear to be related to this loss. The majority of the binding occurs on the C-terminus of OspB. The C-terminus consists of <scene name='G14secL04Tpc3/Three_major_loops2/4'>three major loops </scene> | <scene name='G14secL04Tpc3/Antibody_showing2/1'>Antibody Fab fragment H6831 </scene> (<scene name='G14secL04Tpc3/Heavy_chain/1'>Heavy chain</scene> and <scene name='G14secL04Tpc3/Light_chain/1'>light chain</scene>) has been shown to bind on an epitope of the <scene name='G14secL04Tpc3/Ospb_in_complex_with_heavy_and/2'>OspB protein</scene><ref name ="1rjl_pdb" />. Once this occurs, the resulting OspB∙H6831 complex is formed and the first four beta strands of the OspB protein are proteolysed<ref name ="1rjl_pdb" />. Cleavage of these first four beta strands somehow causes bacterial lysis of the ''B. burdgorferi''. This loss is the most significant conformational change in the OspB protein itself, and all other changes are minor and appear to be related to this loss. The majority of the binding occurs on the C-terminus of OspB. The C-terminus consists of <scene name='G14secL04Tpc3/Three_major_loops2/4'>three major loops </scene> | ||
that are involved in the electrostatic forces keeping the H6831 antibody bound to the OspB protein<ref name ="1rjl_pdb" />. Of these three loops, <scene name='G14secL04Tpc3/Loop_2/4'>the middle loop </scene> | that are involved in the electrostatic forces keeping the H6831 antibody bound to the OspB protein<ref name ="1rjl_pdb" />. Of these three loops, <scene name='G14secL04Tpc3/Loop_2/4'>the middle loop </scene> | ||
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(tryptophan-33 and tyrosine-101) and salt bridging with the glu-50 on the heavy chain of the antibody<ref name ="1rjl_pdb" />. Studies show that other bacterial strains having a cysteine, glycine, glutamic acid, or threonine in place of Lys-253 demonstrate resistance to the bactericidal effects of H6831 and also less binding affinity for the antibody Fab fragment <ref>A Sadziene, M Jonsson, S Bergström, R K Bright, R C Kennedy and A G Barbour. Infect. Immun. 1994, 62(5):2037. http://iai.asm.org/content/62/5/2037.short</ref>. This bolsters how important the Lys-253 is in the binding between the OspB protein and the antibody. Additionally, one report found that an ospB escape mutant in a population of infectious ''B. burgdorferi'', with a single base change in the ribosomal binding sequence and a single nucleotide deletion in the open reading frame of the ospB gene, demonstrated reduced expression and truncation of the OspB protein<ref name ="30_Sadziene"> A Sadziene, A G Barbour, P A Rosa and D D Thomas. Infect. Immun. 1993, 61(9):3590. http://iai.asm.org/content/61/9/3590.short</ref>. This reduced expression and truncation of OspB extenuated the penetration capability and infectivity of the spirochete in the human umbilical vein endothelium cells<ref name = "30_Sadziene" />. Thus, the OspB protein plays a fairly important role in the ability of the spirochete to infect a host, given that when it is damaged the spirochete's ability to infect the host is mitigated. After the complex is formed and the first four beta strands are cleaved off, a relic of this loss is a single <scene name='G14secL04Tpc3/Freely_floating_beta_strand/2'>freely floating beta strand</scene> on the N-terminus of the protein. This beta strand plays a role in the formation of dimers of OspB∙H6831 complex <ref name="1rjl_pdb" /> during crystallization. Although the middle loop bearing the lysine is very important, the other loops certainly contribute to the bonding between OspB and the antibody fab fragment. For example, a <scene name='G14secL04Tpc3/Threonine_and_light_chain/1'>threonine</scene> | (tryptophan-33 and tyrosine-101) and salt bridging with the glu-50 on the heavy chain of the antibody<ref name ="1rjl_pdb" />. Studies show that other bacterial strains having a cysteine, glycine, glutamic acid, or threonine in place of Lys-253 demonstrate resistance to the bactericidal effects of H6831 and also less binding affinity for the antibody Fab fragment <ref>A Sadziene, M Jonsson, S Bergström, R K Bright, R C Kennedy and A G Barbour. Infect. Immun. 1994, 62(5):2037. http://iai.asm.org/content/62/5/2037.short</ref>. This bolsters how important the Lys-253 is in the binding between the OspB protein and the antibody. Additionally, one report found that an ospB escape mutant in a population of infectious ''B. burgdorferi'', with a single base change in the ribosomal binding sequence and a single nucleotide deletion in the open reading frame of the ospB gene, demonstrated reduced expression and truncation of the OspB protein<ref name ="30_Sadziene"> A Sadziene, A G Barbour, P A Rosa and D D Thomas. Infect. Immun. 1993, 61(9):3590. http://iai.asm.org/content/61/9/3590.short</ref>. This reduced expression and truncation of OspB extenuated the penetration capability and infectivity of the spirochete in the human umbilical vein endothelium cells<ref name = "30_Sadziene" />. Thus, the OspB protein plays a fairly important role in the ability of the spirochete to infect a host, given that when it is damaged the spirochete's ability to infect the host is mitigated. After the complex is formed and the first four beta strands are cleaved off, a relic of this loss is a single <scene name='G14secL04Tpc3/Freely_floating_beta_strand/2'>freely floating beta strand</scene> on the N-terminus of the protein. This beta strand plays a role in the formation of dimers of OspB∙H6831 complex <ref name="1rjl_pdb" /> during crystallization. Although the middle loop bearing the lysine is very important, the other loops certainly contribute to the bonding between OspB and the antibody fab fragment. For example, a <scene name='G14secL04Tpc3/Threonine_and_light_chain/1'>threonine</scene> | ||
at residue 276 on another loop interacts with residues on the light chain of the antibody fragment. | at residue 276 on another loop interacts with residues on the light chain of the antibody fragment. | ||
+ | </StructureSection> | ||
+ | __NOTOC__ | ||
==3D Structures== | ==3D Structures== |
Current revision
|
3D Structures
References
- ↑ 1.0 1.1 1.2 Willy Burgdorfer, Alan G. Barbour, Stanley F. Hayes, Jorge L. Benach, Edgar Grunwaldt and Jeffrey P. Davis Science , New Series, Vol. 216, No. 4552 (Jun. 18, 1982), pp. 1317-1319 http://www.jstor.org/stable/1689391
- ↑ 2.0 2.1 Neelakanta G, Li X, Pal U, Liu X, Beck DS, et al. (2007) Outer Surface Protein B Is Critical for Borrelia burgdorferi Adherence and Survival within Ixodes Ticks. PLoS Pathog 3(3): e33. doi:10.1371/journal.ppat.0030033 http://www.plospathogens.org/article/info%3Adoi%2F10.1371%2Fjournal.ppat.0030033
- ↑ 3.0 3.1 3.2 3.3 3.4 3.5 3.6 3.7 3.8 3.9 Becker M, Bunikis J, Lade B, Dunn J, Barbour A, Lawson C. Structural Investigation of Borrelia burgdorferi OspB, a Bactericidal Fab Target. The Journal of Biological Chemistry. 2005 April; 280(17): 17363-17370. http://www.jbc.org/content/280/17/17363.full
- ↑ 4.0 4.1 4.2 De Silva AM, Fikrig E (1995) Growth and migration of Borrelia burgdorferi in Ixodes ticks during blood feeding. Am J Trop Med Hyg 53: 397–404. http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&doptcmdl=Citation&defaultField=Title%20Word&term=De%20Silva%5Bauthor%5D%20AND%20Growth%20and%20migration%20of%20Borrelia%20burgdorferi%20in%20Ixodes%20ticks%20during%20blood%20feeding
- ↑ M E Brandt, B S Riley, J D Radolf and M V Norgard. Immunogenic integral membrane proteins of Borrelia burgdorferi are lipoproteins Infect. Immun. 1990, 58(4):983. http://iai.asm.org/content/58/4/983.short
- ↑ 6.0 6.1 Timothy J. LaRocca, David J. Holthausen, Chyongere Hsieh, Christian Renken, Carmen A. Mannella, Jorge L. Benach and Arturo Casadevall Proceedings of the National Academy of Sciences of the United States of America , Vol. 106, No. 26 (Jun. 30, 2009), pp. 10752-10757 http://www.jstor.org/stable/40483625?&Search=yes&searchText=region&searchText=antibody&searchText=protein&searchText=directed&searchText=bactericidal&searchText=Borrelia&searchText=variable&searchText=burgdorferi&searchText=OspB&list=hide&searchUri=%2Faction%2FdoBasicSearch%3FQuery%3D%2BA%2Bbactericidal%2Bantibody%2Bto%2BBorrelia%2Bburgdorferi%2Bis%2Bdirected%2Bagainst%2Ba%2Bvariable%2Bregion%2Bof%2Bthe%2BOspB%2Bprotein%26acc%3Don%26wc%3Don&prevSearch=&item=3&ttl=7&returnArticleService=showFullText
- ↑ A Sadziene, M Jonsson, S Bergström, R K Bright, R C Kennedy and A G Barbour. Infect. Immun. 1994, 62(5):2037. http://iai.asm.org/content/62/5/2037.short
- ↑ 8.0 8.1 A Sadziene, A G Barbour, P A Rosa and D D Thomas. Infect. Immun. 1993, 61(9):3590. http://iai.asm.org/content/61/9/3590.short
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Michael Cortes, Lian Liu, Michal Harel, Alexander Berchansky