This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2ikd

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (09:40, 9 September 2020) (edit) (undo)
 
(11 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2ikd.gif|left|200px]]<br /><applet load="2ikd" size="350" color="white" frame="true" align="right" spinBox="true"
 
-
caption="2ikd" />
 
-
'''Solution Structure of the first Clip domain in PAP2'''<br />
 
-
==About this Structure==
+
==Solution Structure of the first Clip domain in PAP2==
-
2IKD is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Manduca_sexta Manduca sexta]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2IKD OCA].
+
<StructureSection load='2ikd' size='340' side='right'caption='[[2ikd]], [[NMR_Ensembles_of_Models | 20 NMR models]]' scene=''>
-
[[Category: Manduca sexta]]
+
== Structural highlights ==
-
[[Category: Single protein]]
+
<table><tr><td colspan='2'>[[2ikd]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Carolina_sphinx Carolina sphinx]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2IKD OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=2IKD FirstGlance]. <br>
-
[[Category: Dai, H E.]]
+
</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[2ike|2ike]]</td></tr>
-
[[Category: Huang, R D.]]
+
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">PAP-2 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=7130 Carolina sphinx])</td></tr>
-
[[Category: Jiang, H B.]]
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=2ikd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ikd OCA], [http://pdbe.org/2ikd PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2ikd RCSB], [http://www.ebi.ac.uk/pdbsum/2ikd PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2ikd ProSAT]</span></td></tr>
-
[[Category: Lv, Z Q.]]
+
</table>
-
[[Category: Prakash, O.]]
+
== Evolutionary Conservation ==
-
[[Category: Velde, D V.]]
+
[[Image:Consurf_key_small.gif|200px|right]]
-
[[Category: beta-sheet]]
+
Check<jmol>
-
[[Category: double helix]]
+
<jmolCheckbox>
-
[[Category: hydrolase]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ik/2ikd_consurf.spt"</scriptWhenChecked>
-
 
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Feb 21 17:53:35 2008''
+
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2ikd ConSurf].
 +
<div style="clear:both"></div>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Carolina sphinx]]
 +
[[Category: Large Structures]]
 +
[[Category: Dai, H E]]
 +
[[Category: Huang, R D]]
 +
[[Category: Jiang, H B]]
 +
[[Category: Lv, Z Q]]
 +
[[Category: Prakash, O]]
 +
[[Category: Velde, D V]]
 +
[[Category: Beta-sheet]]
 +
[[Category: Double helix]]
 +
[[Category: Hydrolase]]

Current revision

Solution Structure of the first Clip domain in PAP2

PDB ID 2ikd

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools