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2il1

From Proteopedia

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[[Image:2il1.gif|left|200px]]<br /><applet load="2il1" size="350" color="white" frame="true" align="right" spinBox="true"
 
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caption="2il1, resolution 2.100&Aring;" />
 
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'''Crystal structure of a predicted human GTPase in complex with GDP'''<br />
 
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==About this Structure==
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==Crystal structure of a predicted human GTPase in complex with GDP==
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2IL1 is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens] with <scene name='pdbligand=MG:'>MG</scene>, <scene name='pdbligand=CA:'>CA</scene>, <scene name='pdbligand=GDP:'>GDP</scene> and <scene name='pdbligand=UNX:'>UNX</scene> as [http://en.wikipedia.org/wiki/ligands ligands]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2IL1 OCA].
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<StructureSection load='2il1' size='340' side='right'caption='[[2il1]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
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[[Category: Homo sapiens]]
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== Structural highlights ==
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[[Category: Single protein]]
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<table><tr><td colspan='2'>[[2il1]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2IL1 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2IL1 FirstGlance]. <br>
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[[Category: Arrowsmith, C H.]]
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.1&#8491;</td></tr>
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[[Category: Bochkarev, A.]]
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=GDP:GUANOSINE-5-DIPHOSPHATE'>GDP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=UNX:UNKNOWN+ATOM+OR+ION'>UNX</scene></td></tr>
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[[Category: Edwards, A M.]]
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2il1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2il1 OCA], [https://pdbe.org/2il1 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2il1 RCSB], [https://www.ebi.ac.uk/pdbsum/2il1 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2il1 ProSAT]</span></td></tr>
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[[Category: Landry, R.]]
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</table>
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[[Category: Park, H.]]
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== Function ==
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[[Category: SGC, Structural Genomics Consortium.]]
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[https://www.uniprot.org/uniprot/RAB12_HUMAN RAB12_HUMAN] The small GTPases Rab are key regulators of intracellular membrane trafficking, from the formation of transport vesicles to their fusion with membranes. Rabs cycle between an inactive GDP-bound form and an active GTP-bound form that is able to recruit to membranes different set of downstream effectors directly responsible for vesicle formation, movement, tethering and fusion. That Rab may play a role in protein transport from recycling endosomes to lysosomes regulating, for instance, the degradation of the transferrin receptor. Involved in autophagy (By similarity).
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[[Category: Shen, Y.]]
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== Evolutionary Conservation ==
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[[Category: Sundstrom, M.]]
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[[Image:Consurf_key_small.gif|200px|right]]
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[[Category: Tempel, W.]]
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Check<jmol>
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[[Category: Wang, J.]]
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<jmolCheckbox>
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[[Category: Weigelt, J.]]
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/il/2il1_consurf.spt"</scriptWhenChecked>
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[[Category: CA]]
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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[[Category: GDP]]
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<text>to colour the structure by Evolutionary Conservation</text>
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[[Category: MG]]
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</jmolCheckbox>
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[[Category: UNX]]
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2il1 ConSurf].
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[[Category: g-protein]]
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<div style="clear:both"></div>
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[[Category: gdp]]
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[[Category: gtpase]]
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[[Category: predicted]]
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[[Category: rab]]
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[[Category: sgc]]
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[[Category: structural genomics]]
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[[Category: structural genomics consortium]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Feb 21 17:53:38 2008''
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==See Also==
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*[[Ras-related protein Rab 3D structures|Ras-related protein Rab 3D structures]]
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__TOC__
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</StructureSection>
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[[Category: Homo sapiens]]
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[[Category: Large Structures]]
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[[Category: Arrowsmith CH]]
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[[Category: Bochkarev A]]
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[[Category: Edwards AM]]
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[[Category: Landry R]]
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[[Category: Park H]]
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[[Category: Shen Y]]
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[[Category: Sundstrom M]]
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[[Category: Tempel W]]
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[[Category: Wang J]]
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[[Category: Weigelt J]]

Current revision

Crystal structure of a predicted human GTPase in complex with GDP

PDB ID 2il1

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Proteopedia Page Contributors and Editors (what is this?)

OCA

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