This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2iml

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (11:19, 31 March 2021) (edit) (undo)
 
(14 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2iml.gif|left|200px]]<br /><applet load="2iml" size="350" color="white" frame="true" align="right" spinBox="true"
 
-
caption="2iml, resolution 1.65&Aring;" />
 
-
'''Crystal structure of a hypothetical protein from Archaeoglobus fulgidus binding riboflavin 5'-phosphate'''<br />
 
-
==About this Structure==
+
==Crystal structure of a hypothetical protein from Archaeoglobus fulgidus binding riboflavin 5'-phosphate==
-
2IML is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Archaeoglobus_fulgidus Archaeoglobus fulgidus] with <scene name='pdbligand=FMN:'>FMN</scene> and <scene name='pdbligand=GOL:'>GOL</scene> as [http://en.wikipedia.org/wiki/ligands ligands]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2IML OCA].
+
<StructureSection load='2iml' size='340' side='right'caption='[[2iml]]' scene=''>
-
[[Category: Archaeoglobus fulgidus]]
+
== Structural highlights ==
-
[[Category: Single protein]]
+
<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2IML OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2IML FirstGlance]. <br>
-
[[Category: Adams, J.]]
+
</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2iml FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2iml OCA], [https://pdbe.org/2iml PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2iml RCSB], [https://www.ebi.ac.uk/pdbsum/2iml PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2iml ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/2iml TOPSAN]</span></td></tr>
-
[[Category: Almo, S C.]]
+
</table>
-
[[Category: Bain, K T.]]
+
== Evolutionary Conservation ==
-
[[Category: Bonanno, J B.]]
+
[[Image:Consurf_key_small.gif|200px|right]]
-
[[Category: Burley, S K.]]
+
Check<jmol>
-
[[Category: Dickey, M.]]
+
<jmolCheckbox>
-
[[Category: NYSGXRC, New York Structural GenomiX Research Consortium.]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/im/2iml_consurf.spt"</scriptWhenChecked>
-
[[Category: Ozyurt, S.]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: Sauder, J M.]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Wasserman, S.]]
+
</jmolCheckbox>
-
[[Category: FMN]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2iml ConSurf].
-
[[Category: GOL]]
+
<div style="clear:both"></div>
-
[[Category: fmn binding]]
+
__TOC__
-
[[Category: new york structural genomix research consortium]]
+
</StructureSection>
-
[[Category: nysgxrc]]
+
[[Category: Large Structures]]
-
[[Category: protein structure initiative]]
+
[[Category: Adams J]]
-
[[Category: psi-2]]
+
[[Category: Almo SC]]
-
[[Category: structural genomics]]
+
[[Category: Bain KT]]
-
 
+
[[Category: Bonanno JB]]
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Feb 21 17:54:03 2008''
+
[[Category: Burley SK]]
 +
[[Category: Dickey M]]
 +
[[Category: Ozyurt S]]
 +
[[Category: Sauder JM]]
 +
[[Category: Wasserman S]]

Current revision

Crystal structure of a hypothetical protein from Archaeoglobus fulgidus binding riboflavin 5'-phosphate

PDB ID 2iml

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools