4b53

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{{STRUCTURE_4b53| PDB=4b53 | SCENE= }}
 
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===Crystal structure of the isolated IgG4 CH3 domain===
 
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{{ABSTRACT_PUBMED_23164605}}
 
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==About this Structure==
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==Crystal structure of the isolated IgG4 CH3 domain==
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[[4b53]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4B53 OCA].
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<StructureSection load='4b53' size='340' side='right'caption='[[4b53]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[4b53]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4B53 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4B53 FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.8&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=PCA:PYROGLUTAMIC+ACID'>PCA</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene>, <scene name='pdbligand=TRS:2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL'>TRS</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4b53 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4b53 OCA], [https://pdbe.org/4b53 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4b53 RCSB], [https://www.ebi.ac.uk/pdbsum/4b53 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4b53 ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/IGHG4_HUMAN IGHG4_HUMAN]
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Antibodies of the human IgG4 subclass uniquely undergo a process of Fab-arm exchange in which the heavy-chains of antibodies of different specificities can dissociate and then recombine. The mechanism by which the resulting functionally monovalent but bi-specific antibodies are formed is not only key to understanding their biological role, but is also important for the design of therapeutic monoclonal antibodies. Both the hinge region and the C(H)3 domain interface are known to be involved, and of the residues that differ between human IgG1 and IgG4 in C(H)3, residue 409, the only difference at the interface itself, has been implicated. We report the high resolution (1.8A) structure of the C(H)3 domain dimer of IgG4, and find that Arg409 in IgG4, when compared with Lys409 observed in high resolution IgG1 structures, disrupts a network of water-mediated hydrogen bonding that is conserved in IgG1. Other conformational differences were detected that are a consequence of the presence of Arg409, such as a widening of the separation between residues Asn390 in one domain and Ser 400 in the other, which opens up a groove at the edge of the interface in IgG4 compared with IgG1. The effect of all these differences on the C(H)3 interface, doubled as a result of the interface's two-fold symmetry, is weakening of the inter-domain interaction in IgG4 compared with IgG1. This suggests a mechanism by which Arg409 weakens the C(H)3 interface in IgG4, predisposing this human antibody subclass to Fab-arm exchange.
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==Reference==
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Crystal structure of the human IgG4 C(H)3 dimer reveals the role of Arg409 in the mechanism of Fab-arm exchange.,Davies AM, Rispens T, den Bleker TH, McDonnell JM, Gould HJ, Aalberse RC, Sutton BJ Mol Immunol. 2012 Nov 16;54(1):1-7. doi: 10.1016/j.molimm.2012.10.029. PMID:23164605<ref>PMID:23164605</ref>
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<ref group="xtra">PMID:023164605</ref><references group="xtra"/><references/>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 4b53" style="background-color:#fffaf0;"></div>
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== References ==
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<references/>
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__TOC__
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</StructureSection>
[[Category: Homo sapiens]]
[[Category: Homo sapiens]]
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[[Category: Aalberse, R C.]]
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[[Category: Large Structures]]
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[[Category: Bleker, T H.den.]]
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[[Category: Aalberse RC]]
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[[Category: Davies, A M.]]
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[[Category: Davies AM]]
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[[Category: Gould, H J.]]
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[[Category: Gould HJ]]
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[[Category: McDonnell, J M.]]
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[[Category: McDonnell JM]]
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[[Category: Rispens, T.]]
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[[Category: Rispens T]]
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[[Category: Sutton, B J.]]
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[[Category: Sutton BJ]]
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[[Category: Antibody]]
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[[Category: Den Bleker TH]]
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[[Category: Fab arm exchange]]
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[[Category: Igg1]]
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[[Category: Immune system]]
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[[Category: Immunoglobulin]]
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Current revision

Crystal structure of the isolated IgG4 CH3 domain

PDB ID 4b53

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