4h53

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{{STRUCTURE_4h53| PDB=4h53 | SCENE= }}
 
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===Influenza N2-Tyr406Asp neuraminidase in complex with beta-Neu5Ac===
 
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{{ABSTRACT_PUBMED_23422659}}
 
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==About this Structure==
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==Influenza N2-Tyr406Asp neuraminidase in complex with beta-Neu5Ac==
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[[4h53]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Influenza_a_virus_(a/ri/5+/1957(h2n2)) Influenza a virus (a/ri/5+/1957(h2n2))]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4H53 OCA].
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<StructureSection load='4h53' size='340' side='right'caption='[[4h53]], [[Resolution|resolution]] 1.50&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[4h53]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Influenza_A_virus_(A/RI/5+/1957(H2N2)) Influenza A virus (A/RI/5+/1957(H2N2))]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4H53 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4H53 FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.5&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BMA:BETA-D-MANNOSE'>BMA</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=GAL:BETA-D-GALACTOSE'>GAL</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MAN:ALPHA-D-MANNOSE'>MAN</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=SIA:O-SIALIC+ACID'>SIA</scene>, <scene name='pdbligand=SLB:5-N-ACETYL-BETA-D-NEURAMINIC+ACID'>SLB</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4h53 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4h53 OCA], [https://pdbe.org/4h53 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4h53 RCSB], [https://www.ebi.ac.uk/pdbsum/4h53 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4h53 ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/Q194T1_9INFA Q194T1_9INFA]
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Development of novel influenza neuraminidase inhibitors is critical for preparedness against influenza outbreaks. Knowledge of the neuraminidase enzymatic mechanism and transition-state analogue, 2-deoxy-2,3-didehydro-N-acetylneuraminic acid, contributed to the development of the first generation anti-neuraminidase drugs, zanamivir and oseltamivir. However, lack of evidence regarding influenza neuraminidase key catalytic residues has limited strategies for novel neuraminidase inhibitor design. Here, we confirm that influenza neuraminidase conserved Tyr406 is the key catalytic residue that may function as a nucleophile; thus, mechanism-based covalent inhibition of influenza neuraminidase was conceived. Crystallographic studies reveal that 2alpha,3ax-difluoro-N-acetylneuraminic acid forms a covalent bond with influenza neuraminidase Tyr406 and the compound was found to possess potent anti-influenza activity against both influenza A and B viruses. Our results address many unanswered questions about the influenza neuraminidase catalytic mechanism and demonstrate that covalent inhibition of influenza neuraminidase is a promising and novel strategy for the development of next-generation influenza drugs.
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==Reference==
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Influenza neuraminidase operates via a nucleophilic mechanism and can be targeted by covalent inhibitors.,Vavricka CJ, Liu Y, Kiyota H, Sriwilaijaroen N, Qi J, Tanaka K, Wu Y, Li Q, Li Y, Yan J, Suzuki Y, Gao GF Nat Commun. 2013;4:1491. doi: 10.1038/ncomms2487. PMID:23422659<ref>PMID:23422659</ref>
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<ref group="xtra">PMID:023422659</ref><references group="xtra"/><references/>
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[[Category: Gao, G F.]]
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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[[Category: Kiyota, H.]]
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</div>
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[[Category: Li, Q.]]
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<div class="pdbe-citations 4h53" style="background-color:#fffaf0;"></div>
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[[Category: Li, Y.]]
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[[Category: Liu, Y.]]
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==See Also==
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[[Category: Qi, J.]]
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*[[Neuraminidase 3D structures|Neuraminidase 3D structures]]
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[[Category: Sriwilaijaroen, N.]]
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== References ==
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[[Category: Suzuki, Y.]]
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<references/>
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[[Category: Tanaka, K.]]
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__TOC__
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[[Category: Vavricka, C J.]]
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</StructureSection>
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[[Category: Wu, Y.]]
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[[Category: Large Structures]]
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[[Category: Yan, J.]]
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[[Category: Gao GF]]
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[[Category: Hydrolase]]
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[[Category: Kiyota H]]
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[[Category: Influenza virus surface]]
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[[Category: Li Q]]
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[[Category: Neuraminidase]]
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[[Category: Li Y]]
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[[Category: Liu Y]]
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[[Category: Qi J]]
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[[Category: Sriwilaijaroen N]]
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[[Category: Suzuki Y]]
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[[Category: Tanaka K]]
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[[Category: Vavricka CJ]]
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[[Category: Wu Y]]
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[[Category: Yan J]]

Current revision

Influenza N2-Tyr406Asp neuraminidase in complex with beta-Neu5Ac

PDB ID 4h53

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