This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


4bjy

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (11:01, 9 May 2024) (edit) (undo)
 
(4 intermediate revisions not shown.)
Line 1: Line 1:
-
{{STRUCTURE_4bjy| PDB=4bjy | SCENE= }}
 
-
===Crystal structure of 3-hydroxybenzoate 6-hydroxylase uncovers lipid- assisted flavoprotein strategy for regioselective aromatic hydroxylation: Platinum derivative===
 
-
{{ABSTRACT_PUBMED_23864660}}
 
-
==About this Structure==
+
==Crystal structure of 3-hydroxybenzoate 6-hydroxylase uncovers lipid- assisted flavoprotein strategy for regioselective aromatic hydroxylation: Platinum derivative==
-
[[4bjy]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Rhodococcus_jostii_rha1 Rhodococcus jostii rha1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4BJY OCA].
+
<StructureSection load='4bjy' size='340' side='right'caption='[[4bjy]], [[Resolution|resolution]] 1.52&Aring;' scene=''>
 +
== Structural highlights ==
 +
<table><tr><td colspan='2'>[[4bjy]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Rhodococcus_jostii_RHA1 Rhodococcus jostii RHA1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4BJY OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4BJY FirstGlance]. <br>
 +
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.52&#8491;</td></tr>
 +
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene>, <scene name='pdbligand=P3A:PHOSPHATIDYLGLYCEROL-PHOSPHOGLYCEROL'>P3A</scene></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4bjy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4bjy OCA], [https://pdbe.org/4bjy PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4bjy RCSB], [https://www.ebi.ac.uk/pdbsum/4bjy PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4bjy ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/Q0SFK6_RHOJR Q0SFK6_RHOJR]
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
3-Hydroxybenzoate hydroxylase from Rhodococcus jostii RHA1 (3HB6H) is a dimeric flavoprotein that catalyses the NADH- and oxygen-dependent para-hydroxylation of 3 hydroxybenzoate to 2,5-dihydroxybenzoate. In this study, we report the crystal structure of 3HB6H, as expressed in Escherichia coli. The overall fold of 3HB6H is similar to that of p- hydroxybenzoate hydroxylase (PHBH) and other flavoprotein aromatic hydroxylases. Unexpectedly, a lipid ligand is bound to each 3HB6H monomer. Mass spectral analysis identifies the ligand as a mixture of phosphatidylglycerol and phosphatidylethanolamine. The fatty acid chains occupy hydrophobic channels that deeply penetrate into the interior of the substrate-binding domain of each subunit, whereas the hydrophilic part is exposed on the protein surface, connecting the dimerization domains via few interactions. Most remarkably, the terminal part of a phospholipid acyl chain is directly involved in the substrate-binding site. Co-crystallized chloride ion and the crystal structure of the His213Ser variant with bound 3-hydroxybenzoate provide hints about oxygen activation and substrate hydroxylation. Essential roles are played by His213 in catalysis and Tyr105 in substrate binding. This phospholipid-assisted strategy to control regioselective aromatic hydroxylation is of relevance for optimization of flavin-dependent biocatalysts.
-
==Reference==
+
Crystal structure of 3-hydroxybenzoate 6-hydroxylase uncovers lipid-assisted flavoprotein strategy for regioselective aromatic hydroxylation.,Montersino S, Orru R, Barendregt A, Westphal AH, van Duijn E, Mattevi A, van Berkel WJ J Biol Chem. 2013 Jul 17. PMID:23864660<ref>PMID:23864660</ref>
-
<ref group="xtra">PMID:023864660</ref><references group="xtra"/><references/>
+
 
-
[[Category: Rhodococcus jostii rha1]]
+
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-
[[Category: Barendregt, A.]]
+
</div>
-
[[Category: Berkel, W J.H van.]]
+
<div class="pdbe-citations 4bjy" style="background-color:#fffaf0;"></div>
-
[[Category: Duijn, E van.]]
+
== References ==
-
[[Category: Mattevi, A.]]
+
<references/>
-
[[Category: Montersino, S.]]
+
__TOC__
-
[[Category: Orru, R.]]
+
</StructureSection>
-
[[Category: Westphal, A H.]]
+
[[Category: Large Structures]]
-
[[Category: Gentisate]]
+
[[Category: Rhodococcus jostii RHA1]]
-
[[Category: Oxidoreductase]]
+
[[Category: Barendregt A]]
-
[[Category: Phospholipid]]
+
[[Category: Mattevi A]]
 +
[[Category: Montersino S]]
 +
[[Category: Orru R]]
 +
[[Category: Westphal AH]]
 +
[[Category: Van Berkel WJH]]
 +
[[Category: Van Duijn E]]

Current revision

Crystal structure of 3-hydroxybenzoate 6-hydroxylase uncovers lipid- assisted flavoprotein strategy for regioselective aromatic hydroxylation: Platinum derivative

PDB ID 4bjy

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools