4i4k

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{{STRUCTURE_4i4k| PDB=4i4k | SCENE= }}
 
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===Crystal Structure of Conserved Uncharacterized Protein SgcJ from Streptomyces globisporus===
 
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==About this Structure==
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==Streptomyces globisporus C-1027 9-membered enediyne conserved protein SgcE6==
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[[4i4k]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Streptomyces_globisporus_c-1027 Streptomyces globisporus c-1027]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4I4K OCA].
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<StructureSection load='4i4k' size='340' side='right'caption='[[4i4k]], [[Resolution|resolution]] 1.70&Aring;' scene=''>
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[[Category: Streptomyces globisporus c-1027]]
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== Structural highlights ==
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[[Category: Babnigg, J.]]
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<table><tr><td colspan='2'>[[4i4k]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Streptomyces_globisporus_C-1027 Streptomyces globisporus C-1027]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4I4K OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4I4K FirstGlance]. <br>
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[[Category: Bigelow, L.]]
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.7&#8491;</td></tr>
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[[Category: Bingman, C A.]]
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=1PE:PENTAETHYLENE+GLYCOL'>1PE</scene>, <scene name='pdbligand=CIT:CITRIC+ACID'>CIT</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=PG4:TETRAETHYLENE+GLYCOL'>PG4</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
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[[Category: Clancy, S.]]
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4i4k FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4i4k OCA], [https://pdbe.org/4i4k PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4i4k RCSB], [https://www.ebi.ac.uk/pdbsum/4i4k PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4i4k ProSAT]</span></td></tr>
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[[Category: Joachimiak, A.]]
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</table>
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[[Category: Kim, Y.]]
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== Function ==
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[[Category: Lohman, J.]]
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[https://www.uniprot.org/uniprot/Q8GMG4_STRGL Q8GMG4_STRGL]
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[[Category: MCSG, Midwest Center for Structural Genomics.]]
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<div style="background-color:#fffaf0;">
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[[Category: Ma, M.]]
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== Publication Abstract from PubMed ==
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[[Category: NatPro, Enzyme Discovery for Natural Product Biosynthesis.]]
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Comparative analysis of the enediyne biosynthetic gene clusters revealed sets of conserved genes serving as outstanding candidates for the enediyne core. Here we report the crystal structures of SgcJ and its homologue NCS-Orf16, together with gene inactivation and site-directed mutagenesis studies, to gain insight into enediyne core biosynthesis. Gene inactivation in vivo establishes that SgcJ is required for C-1027 production in Streptomyces globisporus. SgcJ and NCS-Orf16 share a common structure with the nuclear transport factor 2-like superfamily of proteins, featuring a putative substrate binding or catalytic active site. Site-directed mutagenesis of the conserved residues lining this site allowed us to propose that SgcJ and its homologues may play a catalytic role in transforming the linear polyene intermediate, along with other enediyne polyketide synthase-associated enzymes, into an enzyme-sequestered enediyne core intermediate. These findings will help formulate hypotheses and design experiments to ascertain the function of SgcJ and its homologues in nine-membered enediyne core biosynthesis.
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[[Category: Phillips, G N.]]
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[[Category: Shen, B.]]
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Crystal structure of SgcJ, an NTF2-like superfamily protein involved in biosynthesis of the nine-membered enediyne antitumor antibiotic C-1027.,Huang T, Chang CY, Lohman JR, Rudolf JD, Kim Y, Chang C, Yang D, Ma M, Yan X, Crnovcic I, Bigelow L, Clancy S, Bingman CA, Yennamalli RM, Babnigg G, Joachimiak A, Phillips GN, Shen B J Antibiot (Tokyo). 2016 Oct;69(10):731-740. doi: 10.1038/ja.2016.88. Epub 2016, Jul 13. PMID:27406907<ref>PMID:27406907</ref>
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[[Category: Yennamalli, R.]]
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[[Category: Alpha-beta sandwich]]
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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[[Category: Enzyme discovery for natural product biosynthesis]]
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</div>
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[[Category: Mcsg]]
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<div class="pdbe-citations 4i4k" style="background-color:#fffaf0;"></div>
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[[Category: Midwest center for structural genomic]]
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== References ==
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[[Category: Natpro]]
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<references/>
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[[Category: Psi-biology]]
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__TOC__
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[[Category: Structural genomic]]
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</StructureSection>
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[[Category: Unknown function]]
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[[Category: Large Structures]]
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[[Category: Streptomyces globisporus C-1027]]
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[[Category: Babnigg J]]
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[[Category: Bigelow L]]
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[[Category: Bingman CA]]
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[[Category: Clancy S]]
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[[Category: Joachimiak A]]
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[[Category: Kim Y]]
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[[Category: Lohman JR]]
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[[Category: Ma M]]
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[[Category: Phillips Jr GN]]
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[[Category: Shen B]]
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[[Category: Yennamalli R]]

Current revision

Streptomyces globisporus C-1027 9-membered enediyne conserved protein SgcE6

PDB ID 4i4k

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