4k25

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{{STRUCTURE_4k25| PDB=4k25 | SCENE= }}
 
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===Crystal Structure of yeast Qri7 homodimer===
 
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{{ABSTRACT_PUBMED_23620299}}
 
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==Function==
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==Crystal Structure of yeast Qri7 homodimer==
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[[http://www.uniprot.org/uniprot/QRI7_YEAST QRI7_YEAST]] Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in mitochondrial tRNAs that read codons beginning with adenine. Involved in mitochondrial genome maintenance.<ref>PMID:21183954</ref> <ref>PMID:21285948</ref>
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<StructureSection load='4k25' size='340' side='right'caption='[[4k25]], [[Resolution|resolution]] 2.88&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[4k25]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Saccharomyces_cerevisiae_S288C Saccharomyces cerevisiae S288C]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4K25 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4K25 FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.88&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4k25 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4k25 OCA], [https://pdbe.org/4k25 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4k25 RCSB], [https://www.ebi.ac.uk/pdbsum/4k25 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4k25 ProSAT]</span></td></tr>
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</table>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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The universally conserved Kae1/Qri7/YgjD and Sua5/YrdC protein families have been implicated in growth, telomere homeostasis, transcription and the N6-threonylcarbamoylation (t6A) of tRNA, an essential modification required for translational fidelity by the ribosome. In bacteria, YgjD orthologues operate in concert with the bacterial-specific proteins YeaZ and YjeE, whereas in archaeal and eukaryotic systems, Kae1 operates as part of a larger macromolecular assembly called KEOPS with Bud32, Cgi121, Gon7 and Pcc1 subunits. Qri7 orthologues function in the mitochondria and may represent the most primitive member of the Kae1/Qri7/YgjD protein family. In accordance with previous findings, we confirm that Qri7 complements Kae1 function and uncover that Qri7 complements the function of all KEOPS subunits in growth, t6A biosynthesis and, to a partial degree, telomere maintenance. These observations suggest that Kae1 provides a core essential function that other subunits within KEOPS have evolved to support. Consistent with this inference, Qri7 alone is sufficient for t6A biosynthesis with Sua5 in vitro. In addition, the 2.9 A crystal structure of Qri7 reveals a simple homodimer arrangement that is supplanted by the heterodimerization of YgjD with YeaZ in bacteria and heterodimerization of Kae1 with Pcc1 in KEOPS. The partial complementation of telomere maintenance by Qri7 hints that KEOPS has evolved novel functions in higher organisms.
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==About this Structure==
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Reconstitution and characterization of eukaryotic N6-threonylcarbamoylation of tRNA using a minimal enzyme system.,Wan LC, Mao DY, Neculai D, Strecker J, Chiovitti D, Kurinov I, Poda G, Thevakumaran N, Yuan F, Szilard RK, Lissina E, Nislow C, Caudy AA, Durocher D, Sicheri F Nucleic Acids Res. 2013 Apr 25. PMID:23620299<ref>PMID:23620299</ref>
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[[4k25]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Saccharomyces_cerevisiae_s288c Saccharomyces cerevisiae s288c]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4K25 OCA].
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==Reference==
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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<ref group="xtra">PMID:023620299</ref><references group="xtra"/><references/>
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</div>
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[[Category: Saccharomyces cerevisiae s288c]]
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<div class="pdbe-citations 4k25" style="background-color:#fffaf0;"></div>
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[[Category: Mao, D Y.]]
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== References ==
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[[Category: Neculai, D.]]
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<references/>
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[[Category: Sicheri, F.]]
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__TOC__
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[[Category: Wan, L.]]
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</StructureSection>
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[[Category: Askha-fold]]
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[[Category: Large Structures]]
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[[Category: Biosynthetic protein]]
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[[Category: Saccharomyces cerevisiae S288C]]
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[[Category: Mitochondria]]
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[[Category: Mao DY]]
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[[Category: N6-threonylcarbamoylation enzyme]]
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[[Category: Neculai D]]
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[[Category: Rna and metabolite binding]]
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[[Category: Sicheri F]]
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[[Category: Wan L]]

Current revision

Crystal Structure of yeast Qri7 homodimer

PDB ID 4k25

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