1vkl

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[[Image:1vkl.gif|left|200px]]<br />
 
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<applet load="1vkl" size="450" color="white" frame="true" align="right" spinBox="true"
 
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caption="1vkl, resolution 2.7&Aring;" />
 
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'''RABBIT MUSCLE PHOSPHOGLUCOMUTASE'''<br />
 
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==Overview==
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==RABBIT MUSCLE PHOSPHOGLUCOMUTASE==
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An electron density map of the reactive, Cd2+ form of crystalline, phosphoglucomutase from X-ray diffraction studies shows that the enzymic, phosphate donates a nonbridging oxygen to the ligand sphere of the bound, metal ion, which appears to be tetracoordinate. 31P and 113Cd NMR, spectroscopy are used to assess changes in the properties of bound Cd2+, produced by substrate/product and by substrate/product analog inhibitors., The approximately 50 ppm downfield shift of the 113Cd resonance on, formation of the complex of dephosphoenzyme and glucose 1,6-bisphosphate, is associated with the initial sugar-phosphate binding step and likely, involves a change in the geometry of the coordinating ligands. This, interpretation is supported by spectral studies involving various, complexes of the ... [[http://ispc.weizmann.ac.il/pmbin/getpm?8418859 (full description)]]
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<StructureSection load='1vkl' size='340' side='right'caption='[[1vkl]], [[Resolution|resolution]] 2.70&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[1vkl]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Oryctolagus_cuniculus Oryctolagus cuniculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1VKL OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1VKL FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.7&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NI:NICKEL+(II)+ION'>NI</scene>, <scene name='pdbligand=SEP:PHOSPHOSERINE'>SEP</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1vkl FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1vkl OCA], [https://pdbe.org/1vkl PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1vkl RCSB], [https://www.ebi.ac.uk/pdbsum/1vkl PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1vkl ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/PGM1_RABIT PGM1_RABIT] This enzyme participates in both the breakdown and synthesis of glucose.
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/vk/1vkl_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1vkl ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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An electron density map of the reactive, Cd2+ form of crystalline phosphoglucomutase from X-ray diffraction studies shows that the enzymic phosphate donates a nonbridging oxygen to the ligand sphere of the bound metal ion, which appears to be tetracoordinate. 31P and 113Cd NMR spectroscopy are used to assess changes in the properties of bound Cd2+ produced by substrate/product and by substrate/product analog inhibitors. The approximately 50 ppm downfield shift of the 113Cd resonance on formation of the complex of dephosphoenzyme and glucose 1,6-bisphosphate is associated with the initial sugar-phosphate binding step and likely involves a change in the geometry of the coordinating ligands. This interpretation is supported by spectral studies involving various complexes of the active Co2+ and Ni(2+)-enzyme. In addition, there is a loss of the 31P-113Cd J coupling that characterizes the monophosphate complexes of the Cd2+ enzyme either during or immediately after the PO3- transfer step that produces the bisphosphate complex, indicating a further change at the metal binding site. The implications of these observations with respect to the PO3- transfer process in the phosphoglucomutase reaction are considered. The apparent plasticity of the ligand sphere of the active site metal ion in this system may allow a single metal ion to act as a chaperone for a nonbridging oxygen during PO3- transfer or to allow a change in metal ion coordination during catalysis. A general NMR line shape/chemical-exchange analysis for evaluating binding in protein-ligand systems when exchange is intermediate to fast on the NMR time scale is described. Its application to the present system involves multiple exchange sites that depend on a single binding rate, thereby adding further constraints to the analysis.
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==About this Structure==
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Structural changes at the metal ion binding site during the phosphoglucomutase reaction.,Ray WJ Jr, Post CB, Liu Y, Rhyu GI Biochemistry. 1993 Jan 12;32(1):48-57. PMID:8418859<ref>PMID:8418859</ref>
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1VKL is a [[http://en.wikipedia.org/wiki/Single_protein Single protein]] structure of sequence from [[http://en.wikipedia.org/wiki/Oryctolagus_cuniculus Oryctolagus cuniculus]] with NI as [[http://en.wikipedia.org/wiki/ligand ligand]]. Active as [[http://en.wikipedia.org/wiki/Phosphoglucomutase Phosphoglucomutase]], with EC number [[http://www.brenda-enzymes.info/php/result_flat.php4?ecno=5.4.2.2 5.4.2.2]]. Structure known Active Sites: MBA and MBB. Full crystallographic information is available from [[http://ispc.weizmann.ac.il/oca-bin/ocashort?id=1VKL OCA]].
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==Reference==
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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Structural changes at the metal ion binding site during the phosphoglucomutase reaction., Ray WJ Jr, Post CB, Liu Y, Rhyu GI, Biochemistry. 1993 Jan 12;32(1):48-57. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=8418859 8418859]
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</div>
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<div class="pdbe-citations 1vkl" style="background-color:#fffaf0;"></div>
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== References ==
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<references/>
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__TOC__
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</StructureSection>
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[[Category: Large Structures]]
[[Category: Oryctolagus cuniculus]]
[[Category: Oryctolagus cuniculus]]
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[[Category: Phosphoglucomutase]]
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[[Category: Baranidharan S]]
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[[Category: Single protein]]
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[[Category: Liu Y]]
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[[Category: Baranidharan, S.]]
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[[Category: Ray Junior WJ]]
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[[Category: Junior, W.J.Ray.]]
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[[Category: Liu, Y.]]
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[[Category: NI]]
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[[Category: phosphoglucomutase]]
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[[Category: phosphotransferase]]
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''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Tue Oct 30 16:19:02 2007''
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Current revision

RABBIT MUSCLE PHOSPHOGLUCOMUTASE

PDB ID 1vkl

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