2nxb

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (10:25, 30 August 2023) (edit) (undo)
 
(12 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2nxb.gif|left|200px]]<br /><applet load="2nxb" size="350" color="white" frame="true" align="right" spinBox="true"
 
-
caption="2nxb, resolution 1.40&Aring;" />
 
-
'''Crystal structure of human Bromodomain containing protein 3 (BRD3)'''<br />
 
-
==About this Structure==
+
==Crystal structure of human Bromodomain containing protein 3 (BRD3)==
-
2NXB is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens] with <scene name='pdbligand=NA:'>NA</scene> and <scene name='pdbligand=EDO:'>EDO</scene> as [http://en.wikipedia.org/wiki/ligands ligands]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2NXB OCA].
+
<StructureSection load='2nxb' size='340' side='right'caption='[[2nxb]], [[Resolution|resolution]] 1.40&Aring;' scene=''>
-
[[Category: Homo sapiens]]
+
== Structural highlights ==
-
[[Category: Single protein]]
+
<table><tr><td colspan='2'>[[2nxb]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2NXB OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2NXB FirstGlance]. <br>
-
[[Category: Arrowsmith, C.]]
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.4&#8491;</td></tr>
-
[[Category: Berridge, G.]]
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
-
[[Category: Bullock, A.]]
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2nxb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2nxb OCA], [https://pdbe.org/2nxb PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2nxb RCSB], [https://www.ebi.ac.uk/pdbsum/2nxb PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2nxb ProSAT]</span></td></tr>
-
[[Category: Bunkoczi, G.]]
+
</table>
-
[[Category: Cooper, C.]]
+
== Disease ==
-
[[Category: Delft, F von.]]
+
[https://www.uniprot.org/uniprot/BRD3_HUMAN BRD3_HUMAN] Note=A chromosomal aberration involving BRD3 is found in a rare, aggressive, and lethal carcinoma arising in midline organs of young people. Translocation t(15;9)(q14;q34) with NUT which produces a BRD3-NUT fusion protein.
-
[[Category: Edwards, A.]]
+
== Function ==
-
[[Category: Filippakopoulos, P.]]
+
[https://www.uniprot.org/uniprot/BRD3_HUMAN BRD3_HUMAN] Binds hyperacetylated chromatin and plays a role in the regulation of transcription, probably by chromatin remodeling and interaction with transcription factors. Regulates transcription by promoting the binding of the transcription factor GATA1 to its targets (By similarity). Regulates transcription of the CCND1 gene.<ref>PMID:18406326</ref>
-
[[Category: Keates, K.]]
+
== Evolutionary Conservation ==
-
[[Category: Knapp, S.]]
+
[[Image:Consurf_key_small.gif|200px|right]]
-
[[Category: Pike, A.]]
+
Check<jmol>
-
[[Category: SGC, Structural Genomics Consortium.]]
+
<jmolCheckbox>
-
[[Category: Sundstrom, M.]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/nx/2nxb_consurf.spt"</scriptWhenChecked>
-
[[Category: EDO]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: NA]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: brd3]]
+
</jmolCheckbox>
-
[[Category: bromodomain containing protein 3]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2nxb ConSurf].
-
[[Category: orfx]]
+
<div style="clear:both"></div>
-
[[Category: ring3 like gene]]
+
<div style="background-color:#fffaf0;">
-
[[Category: ring3l]]
+
== Publication Abstract from PubMed ==
-
[[Category: sgc]]
+
Bromodomains (BRDs) are protein interaction modules that specifically recognize epsilon-N-lysine acetylation motifs, a key event in the reading process of epigenetic marks. The 61 BRDs in the human genome cluster into eight families based on structure/sequence similarity. Here, we present 29 high-resolution crystal structures, covering all BRD families. Comprehensive crossfamily structural analysis identifies conserved and family-specific structural features that are necessary for specific acetylation-dependent substrate recognition. Screening of more than 30 representative BRDs against systematic histone-peptide arrays identifies new BRD substrates and reveals a strong influence of flanking posttranslational modifications, such as acetylation and phosphorylation, suggesting that BRDs recognize combinations of marks rather than singly acetylated sequences. We further uncovered a structural mechanism for the simultaneous binding and recognition of diverse diacetyl-containing peptides by BRD4. These data provide a foundation for structure-based drug design of specific inhibitors for this emerging target family.
-
[[Category: structural genomics]]
+
-
[[Category: structural genomics consortium]]
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Feb 21 18:12:02 2008''
+
Histone recognition and large-scale structural analysis of the human bromodomain family.,Filippakopoulos P, Picaud S, Mangos M, Keates T, Lambert JP, Barsyte-Lovejoy D, Felletar I, Volkmer R, Muller S, Pawson T, Gingras AC, Arrowsmith CH, Knapp S Cell. 2012 Mar 30;149(1):214-31. PMID:22464331<ref>PMID:22464331</ref>
 +
 
 +
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
 +
</div>
 +
<div class="pdbe-citations 2nxb" style="background-color:#fffaf0;"></div>
 +
 
 +
==See Also==
 +
*[[Bromodomain-containing protein 3D structures|Bromodomain-containing protein 3D structures]]
 +
== References ==
 +
<references/>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Homo sapiens]]
 +
[[Category: Large Structures]]
 +
[[Category: Arrowsmith C]]
 +
[[Category: Berridge G]]
 +
[[Category: Bullock A]]
 +
[[Category: Bunkoczi G]]
 +
[[Category: Cooper C]]
 +
[[Category: Edwards A]]
 +
[[Category: Filippakopoulos P]]
 +
[[Category: Keates K]]
 +
[[Category: Knapp S]]
 +
[[Category: Pike A]]
 +
[[Category: Sundstrom M]]
 +
[[Category: Von Delft F]]

Current revision

Crystal structure of human Bromodomain containing protein 3 (BRD3)

PDB ID 2nxb

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/2nxb"
Personal tools