We apologize for Proteopedia being slow to respond. For the past two years, a new implementation of Proteopedia has been being built. Soon, it will replace this 18-year old system. All existing content will be moved to the new system at a date that will be announced here.

2nxo

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (00:11, 28 December 2023) (edit) (undo)
 
(14 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2nxo.gif|left|200px]]<br /><applet load="2nxo" size="350" color="white" frame="true" align="right" spinBox="true"
 
-
caption="2nxo, resolution 2.04&Aring;" />
 
-
'''Crystal structure of protein SCO4506 from Streptomyces coelicolor, Pfam DUF178'''<br />
 
-
==About this Structure==
+
==Crystal structure of protein SCO4506 from Streptomyces coelicolor, Pfam DUF178==
-
2NXO is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Streptomyces_coelicolor Streptomyces coelicolor]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2NXO OCA].
+
<StructureSection load='2nxo' size='340' side='right'caption='[[2nxo]], [[Resolution|resolution]] 2.04&Aring;' scene=''>
-
[[Category: Single protein]]
+
== Structural highlights ==
 +
<table><tr><td colspan='2'>[[2nxo]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Streptomyces_coelicolor Streptomyces coelicolor]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2NXO OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2NXO FirstGlance]. <br>
 +
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.04&#8491;</td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2nxo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2nxo OCA], [https://pdbe.org/2nxo PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2nxo RCSB], [https://www.ebi.ac.uk/pdbsum/2nxo PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2nxo ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/2nxo TOPSAN]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/MQNA_STRCO MQNA_STRCO] Catalyzes the dehydration of chorismate into 3-[(1-carboxyvinyl)oxy]benzoate, a step in the biosynthesis of menaquinone (MK, vitamin K2).[HAMAP-Rule:MF_00995]
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/nx/2nxo_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2nxo ConSurf].
 +
<div style="clear:both"></div>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Large Structures]]
[[Category: Streptomyces coelicolor]]
[[Category: Streptomyces coelicolor]]
-
[[Category: Burley, S K.]]
+
[[Category: Burley SK]]
-
[[Category: Eswaramoorthy, S.]]
+
[[Category: Eswaramoorthy S]]
-
[[Category: NYSGXRC, New York Structural GenomiX Research Consortium.]]
+
[[Category: Swaminathan S]]
-
[[Category: Swaminathan, S.]]
+
[[Category: Tyagi R]]
-
[[Category: Tyagi, R.]]
+
-
[[Category: 10093f]]
+
-
[[Category: duf178]]
+
-
[[Category: new york structural genomix research consortium]]
+
-
[[Category: nysgxrc]]
+
-
[[Category: pfam]]
+
-
[[Category: protein structure initiative]]
+
-
[[Category: psi-2]]
+
-
[[Category: structural genomics]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Feb 21 18:12:09 2008''
+

Current revision

Crystal structure of protein SCO4506 from Streptomyces coelicolor, Pfam DUF178

PDB ID 2nxo

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools