4fyc
From Proteopedia
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- | {{STRUCTURE_4fyc| PDB=4fyc | SCENE= }} | ||
- | ===Structural and functional characterizations of a thioredoxin-fold protein from Helicobacter pylori=== | ||
- | {{ABSTRACT_PUBMED_23633582}} | ||
- | == | + | ==Structural and functional characterizations of a thioredoxin-fold protein from Helicobacter pylori== |
- | [[4fyc]] is a 2 chain structure with sequence from [ | + | <StructureSection load='4fyc' size='340' side='right'caption='[[4fyc]], [[Resolution|resolution]] 2.31Å' scene=''> |
+ | == Structural highlights == | ||
+ | <table><tr><td colspan='2'>[[4fyc]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Helicobacter_pylori_26695 Helicobacter pylori 26695]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4FYC OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4FYC FirstGlance]. <br> | ||
+ | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.31Å</td></tr> | ||
+ | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=PG4:TETRAETHYLENE+GLYCOL'>PG4</scene></td></tr> | ||
+ | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4fyc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4fyc OCA], [https://pdbe.org/4fyc PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4fyc RCSB], [https://www.ebi.ac.uk/pdbsum/4fyc PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4fyc ProSAT]</span></td></tr> | ||
+ | </table> | ||
+ | == Function == | ||
+ | [https://www.uniprot.org/uniprot/O25140_HELPY O25140_HELPY] | ||
+ | <div style="background-color:#fffaf0;"> | ||
+ | == Publication Abstract from PubMed == | ||
+ | Maturation of cytochrome c is carried out in the bacterial periplasm, where specialized thiol-disulfide oxidoreductases provide the correct reduction of oxidized apocytochrome c before covalent haem attachment. HP0377 from Helicobacter pylori is a thioredoxin-fold protein that has been implicated as a component of system II for cytochrome c assembly and shows limited sequence similarity to Escherichia coli DsbC, a disulfide-bond isomerase. To better understand the role of HP0377, its crystal structures have been determined in both reduced and partially oxidized states, which are highly similar to each other. Sedimentation-equilibrium experiments indicate that HP0377 is monomeric in solution. HP0377 adopts a thioredoxin fold but shows distinctive variations as in other thioredoxin-like bacterial periplasmic proteins. The active site of HP0377 closely resembles that of E. coli DsbC. A reductase assay suggests that HP0377 may play a role as a reductase in the biogenesis of holocytochrome c553 (HP1227). Binding experiments indicate that it can form a covalent complex with HP0518, a putative L,D-transpeptidase with a catalytic cysteine residue, via a disulfide bond. Furthermore, physicochemical properties of HP0377 and its R86A variant have been determined. These results suggest that HP0377 may perform multiple functions as a reductase in H. pylori. | ||
- | + | Structural and functional characterization of HP0377, a thioredoxin-fold protein from Helicobacter pylori.,Yoon JY, Kim J, An DR, Lee SJ, Kim HS, Im HN, Yoon HJ, Kim JY, Kim SJ, Han BW, Suh SW Acta Crystallogr D Biol Crystallogr. 2013 May;69(Pt 5):735-46. doi:, 10.1107/S0907444913001236. Epub 2013 Apr 11. PMID:23633582<ref>PMID:23633582</ref> | |
- | <ref | + | |
+ | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
+ | </div> | ||
+ | <div class="pdbe-citations 4fyc" style="background-color:#fffaf0;"></div> | ||
+ | |||
+ | ==See Also== | ||
+ | *[[Thiol:disulfide interchange protein 3D structures|Thiol:disulfide interchange protein 3D structures]] | ||
+ | == References == | ||
+ | <references/> | ||
+ | __TOC__ | ||
+ | </StructureSection> | ||
[[Category: Helicobacter pylori 26695]] | [[Category: Helicobacter pylori 26695]] | ||
- | [[Category: An | + | [[Category: Large Structures]] |
- | [[Category: Han | + | [[Category: An DR]] |
- | [[Category: Im | + | [[Category: Han BW]] |
- | [[Category: Kim | + | [[Category: Im HN]] |
- | [[Category: Kim | + | [[Category: Kim HS]] |
- | [[Category: Kim | + | [[Category: Kim J]] |
- | [[Category: Kim | + | [[Category: Kim JY]] |
- | [[Category: Lee | + | [[Category: Kim S]] |
- | [[Category: Suh | + | [[Category: Lee SJ]] |
- | [[Category: Yoon | + | [[Category: Suh SW]] |
- | [[Category: Yoon | + | [[Category: Yoon H]] |
- | + | [[Category: Yoon JY]] | |
- | + | ||
- | + |
Current revision
Structural and functional characterizations of a thioredoxin-fold protein from Helicobacter pylori
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Categories: Helicobacter pylori 26695 | Large Structures | An DR | Han BW | Im HN | Kim HS | Kim J | Kim JY | Kim S | Lee SJ | Suh SW | Yoon H | Yoon JY