4fyc

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (13:54, 8 November 2023) (edit) (undo)
 
(3 intermediate revisions not shown.)
Line 1: Line 1:
-
{{STRUCTURE_4fyc| PDB=4fyc | SCENE= }}
 
-
===Structural and functional characterizations of a thioredoxin-fold protein from Helicobacter pylori===
 
-
{{ABSTRACT_PUBMED_23633582}}
 
-
==About this Structure==
+
==Structural and functional characterizations of a thioredoxin-fold protein from Helicobacter pylori==
-
[[4fyc]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Helicobacter_pylori_26695 Helicobacter pylori 26695]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4FYC OCA].
+
<StructureSection load='4fyc' size='340' side='right'caption='[[4fyc]], [[Resolution|resolution]] 2.31&Aring;' scene=''>
 +
== Structural highlights ==
 +
<table><tr><td colspan='2'>[[4fyc]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Helicobacter_pylori_26695 Helicobacter pylori 26695]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4FYC OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4FYC FirstGlance]. <br>
 +
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.31&#8491;</td></tr>
 +
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=PG4:TETRAETHYLENE+GLYCOL'>PG4</scene></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4fyc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4fyc OCA], [https://pdbe.org/4fyc PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4fyc RCSB], [https://www.ebi.ac.uk/pdbsum/4fyc PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4fyc ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/O25140_HELPY O25140_HELPY]
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
Maturation of cytochrome c is carried out in the bacterial periplasm, where specialized thiol-disulfide oxidoreductases provide the correct reduction of oxidized apocytochrome c before covalent haem attachment. HP0377 from Helicobacter pylori is a thioredoxin-fold protein that has been implicated as a component of system II for cytochrome c assembly and shows limited sequence similarity to Escherichia coli DsbC, a disulfide-bond isomerase. To better understand the role of HP0377, its crystal structures have been determined in both reduced and partially oxidized states, which are highly similar to each other. Sedimentation-equilibrium experiments indicate that HP0377 is monomeric in solution. HP0377 adopts a thioredoxin fold but shows distinctive variations as in other thioredoxin-like bacterial periplasmic proteins. The active site of HP0377 closely resembles that of E. coli DsbC. A reductase assay suggests that HP0377 may play a role as a reductase in the biogenesis of holocytochrome c553 (HP1227). Binding experiments indicate that it can form a covalent complex with HP0518, a putative L,D-transpeptidase with a catalytic cysteine residue, via a disulfide bond. Furthermore, physicochemical properties of HP0377 and its R86A variant have been determined. These results suggest that HP0377 may perform multiple functions as a reductase in H. pylori.
-
==Reference==
+
Structural and functional characterization of HP0377, a thioredoxin-fold protein from Helicobacter pylori.,Yoon JY, Kim J, An DR, Lee SJ, Kim HS, Im HN, Yoon HJ, Kim JY, Kim SJ, Han BW, Suh SW Acta Crystallogr D Biol Crystallogr. 2013 May;69(Pt 5):735-46. doi:, 10.1107/S0907444913001236. Epub 2013 Apr 11. PMID:23633582<ref>PMID:23633582</ref>
-
<ref group="xtra">PMID:023633582</ref><references group="xtra"/><references/>
+
 
 +
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
 +
</div>
 +
<div class="pdbe-citations 4fyc" style="background-color:#fffaf0;"></div>
 +
 
 +
==See Also==
 +
*[[Thiol:disulfide interchange protein 3D structures|Thiol:disulfide interchange protein 3D structures]]
 +
== References ==
 +
<references/>
 +
__TOC__
 +
</StructureSection>
[[Category: Helicobacter pylori 26695]]
[[Category: Helicobacter pylori 26695]]
-
[[Category: An, D R.]]
+
[[Category: Large Structures]]
-
[[Category: Han, B W.]]
+
[[Category: An DR]]
-
[[Category: Im, H N.]]
+
[[Category: Han BW]]
-
[[Category: Kim, H S.]]
+
[[Category: Im HN]]
-
[[Category: Kim, J.]]
+
[[Category: Kim HS]]
-
[[Category: Kim, J Y.]]
+
[[Category: Kim J]]
-
[[Category: Kim, S.]]
+
[[Category: Kim JY]]
-
[[Category: Lee, S J.]]
+
[[Category: Kim S]]
-
[[Category: Suh, S W.]]
+
[[Category: Lee SJ]]
-
[[Category: Yoon, H.]]
+
[[Category: Suh SW]]
-
[[Category: Yoon, J Y.]]
+
[[Category: Yoon H]]
-
[[Category: Oxidoreductase]]
+
[[Category: Yoon JY]]
-
[[Category: Reductase]]
+
-
[[Category: Thioredoxin fold]]
+

Current revision

Structural and functional characterizations of a thioredoxin-fold protein from Helicobacter pylori

PDB ID 4fyc

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools