2oh2

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[[Image:2oh2.gif|left|200px]]<br /><applet load="2oh2" size="350" color="white" frame="true" align="right" spinBox="true"
 
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caption="2oh2, resolution 3.05&Aring;" />
 
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'''Ternary Complex of Human DNA Polymerase'''<br />
 
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==About this Structure==
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==Ternary Complex of Human DNA Polymerase==
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2OH2 is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens] with <scene name='pdbligand=MG:'>MG</scene> and <scene name='pdbligand=TTP:'>TTP</scene> as [http://en.wikipedia.org/wiki/ligands ligands]. Active as [http://en.wikipedia.org/wiki/DNA-directed_DNA_polymerase DNA-directed DNA polymerase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.7.7 2.7.7.7] Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OH2 OCA].
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<StructureSection load='2oh2' size='340' side='right'caption='[[2oh2]], [[Resolution|resolution]] 3.05&Aring;' scene=''>
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[[Category: DNA-directed DNA polymerase]]
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== Structural highlights ==
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[[Category: Homo sapiens]]
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<table><tr><td colspan='2'>[[2oh2]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OH2 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2OH2 FirstGlance]. <br>
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[[Category: Single protein]]
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.05&#8491;</td></tr>
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[[Category: Aggarwal, A K.]]
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=TTP:THYMIDINE-5-TRIPHOSPHATE'>TTP</scene></td></tr>
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[[Category: Lone, S.]]
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2oh2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2oh2 OCA], [https://pdbe.org/2oh2 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2oh2 RCSB], [https://www.ebi.ac.uk/pdbsum/2oh2 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2oh2 ProSAT]</span></td></tr>
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[[Category: Prakash, L.]]
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</table>
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[[Category: Prakash, S.]]
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== Function ==
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[[Category: Townson, S A.]]
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[https://www.uniprot.org/uniprot/POLK_HUMAN POLK_HUMAN] DNA polymerase specifically involved in DNA repair. Plays an important role in translesion synthesis, where the normal high-fidelity DNA polymerases cannot proceed and DNA synthesis stalls. Depending on the context, it inserts the correct base, but causes frequent base transitions, transversions and frameshifts. Lacks 3'-5' proofreading exonuclease activity. Forms a Schiff base with 5'-deoxyribose phosphate at abasic sites, but does not have lyase activity.<ref>PMID:10620008</ref> <ref>PMID:11024016</ref> <ref>PMID:12145297</ref> <ref>PMID:12444249</ref> <ref>PMID:12952891</ref> <ref>PMID:14630940</ref> <ref>PMID:15533436</ref>
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[[Category: Uljon, S N]]
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== Evolutionary Conservation ==
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[[Category: MG]]
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[[Image:Consurf_key_small.gif|200px|right]]
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[[Category: TTP]]
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Check<jmol>
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[[Category: dna polymerase]]
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/oh/2oh2_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2oh2 ConSurf].
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<div style="clear:both"></div>
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Feb 21 18:18:26 2008''
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==See Also==
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*[[DNA polymerase 3D structures|DNA polymerase 3D structures]]
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== References ==
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<references/>
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__TOC__
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</StructureSection>
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[[Category: Homo sapiens]]
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[[Category: Large Structures]]
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[[Category: Aggarwal AK]]
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[[Category: Lone S]]
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[[Category: Prakash L]]
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[[Category: Prakash S]]
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[[Category: Townson SA]]
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[[Category: Uljon SN]]

Current revision

Ternary Complex of Human DNA Polymerase

PDB ID 2oh2

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