3gfi

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:26, 20 March 2024) (edit) (undo)
 
(4 intermediate revisions not shown.)
Line 1: Line 1:
-
{{STRUCTURE_3gfi| PDB=3gfi | SCENE= }}
 
-
===Crystal structure of ST1710 complexed with its promoter DNA===
 
-
{{ABSTRACT_PUBMED_19509310}}
 
-
==About this Structure==
+
==Crystal structure of ST1710 complexed with its promoter DNA==
-
[[3gfi]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Sulfolobus_tokodaii Sulfolobus tokodaii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GFI OCA].
+
<StructureSection load='3gfi' size='340' side='right'caption='[[3gfi]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
-
 
+
== Structural highlights ==
-
==Reference==
+
<table><tr><td colspan='2'>[[3gfi]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Sulfurisphaera_tokodaii Sulfurisphaera tokodaii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GFI OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3GFI FirstGlance]. <br>
-
<ref group="xtra">PMID:019509310</ref><references group="xtra"/><references/>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.1&#8491;</td></tr>
-
[[Category: Sulfolobus tokodaii]]
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3gfi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3gfi OCA], [https://pdbe.org/3gfi PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3gfi RCSB], [https://www.ebi.ac.uk/pdbsum/3gfi PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3gfi ProSAT], [https://www.topsan.org/Proteins/RSGI/3gfi TOPSAN]</span></td></tr>
-
[[Category: Kumarevel, T.]]
+
</table>
-
[[Category: Tanaka, T.]]
+
== Function ==
-
[[Category: Yokoyama, S.]]
+
[https://www.uniprot.org/uniprot/Q96ZY1_SULTO Q96ZY1_SULTO]
-
[[Category: Dna-binding]]
+
== Evolutionary Conservation ==
-
[[Category: Marr]]
+
[[Image:Consurf_key_small.gif|200px|right]]
-
[[Category: National project on protein structural and functional analyse]]
+
Check<jmol>
-
[[Category: Nppsfa]]
+
<jmolCheckbox>
-
[[Category: Riken structural genomics/proteomics initiative]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gf/3gfi_consurf.spt"</scriptWhenChecked>
-
[[Category: Rsgi]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: St1710]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Structural genomic]]
+
</jmolCheckbox>
-
[[Category: Transcription]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3gfi ConSurf].
-
[[Category: Transcription regulation]]
+
<div style="clear:both"></div>
-
[[Category: Transcription regulator]]
+
__TOC__
-
[[Category: Transcription-dna complex]]
+
</StructureSection>
 +
[[Category: Large Structures]]
 +
[[Category: Sulfurisphaera tokodaii]]
 +
[[Category: Kumarevel T]]
 +
[[Category: Tanaka T]]
 +
[[Category: Yokoyama S]]

Current revision

Crystal structure of ST1710 complexed with its promoter DNA

PDB ID 3gfi

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools