3zi0

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{{STRUCTURE_3zi0| PDB=3zi0 | SCENE= }}
 
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===Structure of Mycobacterium tuberculosis DXR in complex with a fosmidomycin analogue===
 
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{{ABSTRACT_PUBMED_23819803}}
 
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==About this Structure==
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==Structure of Mycobacterium tuberculosis DXR in complex with a fosmidomycin analogue==
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[[3zi0]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Mycobacterium_tuberculosis_h37rv Mycobacterium tuberculosis h37rv]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3ZI0 OCA].
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<StructureSection load='3zi0' size='340' side='right'caption='[[3zi0]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[3zi0]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Mycobacterium_tuberculosis_H37Rv Mycobacterium tuberculosis H37Rv]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3ZI0 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3ZI0 FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.9&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FM8:[(1S)-1-(3,4-DICHLOROPHENYL)-3-{HYDROXY[2-(1H-1,2,4-TRIAZOL-1-YLMETHYL)BENZOYL]AMINO}PROPYL]PHOSPHONIC+ACID'>FM8</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3zi0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3zi0 OCA], [https://pdbe.org/3zi0 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3zi0 RCSB], [https://www.ebi.ac.uk/pdbsum/3zi0 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3zi0 ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/DXR_MYCTU DXR_MYCTU] Catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate (MEP) (By similarity).
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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The antimalarial compound fosmidomycin targets DXR, the enzyme that catalyzes the first committed step in the MEP pathway, producing the essential isoprenoid precursors, isopentenyl diphosphate and dimethylallyl diphosphate. The MEP pathway is used by a number of pathogens, including Mycobacterium tuberculosis and apicomplexan parasites, and differs from the classical mevalonate pathway that is essential in humans. Using a structure-based approach, we designed a number of analogues of fosmidomycin, including a series that are substituted in both the Calpha and the hydroxamate positions. The latter proved to be a stable framework for the design of inhibitors that extend from the polar and cramped (and so not easily druggable) substrate-binding site and can, for the first time, bridge the substrate and cofactor binding sites. A number of these compounds are more potent than fosmidomycin in terms of killing Plasmodium falciparum in an in vitro assay; the best has an IC50 of 40 nM.
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==Reference==
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DXR inhibition by potent mono- and disubstituted fosmidomycin analogues.,Jansson AM, Wieckowska A, Bjorkelid C, Yahiaoui S, Sooriyaarachchi S, Lindh M, Bergfors T, Dharavath S, Desroses M, Suresh S, Andaloussi M, Nikhil R, Sreevalli S, Srinivasa BR, Larhed M, Jones TA, Karlen A, Mowbray SL J Med Chem. 2013 Aug 8;56(15):6190-9. doi: 10.1021/jm4006498. Epub 2013 Jul 17. PMID:23819803<ref>PMID:23819803</ref>
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<ref group="xtra">PMID:023819803</ref><references group="xtra"/><references/>
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[[Category: 1-deoxy-D-xylulose-5-phosphate reductoisomerase]]
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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[[Category: Mycobacterium tuberculosis h37rv]]
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</div>
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[[Category: Bergfors, T.]]
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<div class="pdbe-citations 3zi0" style="background-color:#fffaf0;"></div>
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[[Category: Bjorkelid, C.]]
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[[Category: Jansson, A M.]]
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==See Also==
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[[Category: Jones, T A.]]
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*[[DXP reductoisomerase 3D Structures|DXP reductoisomerase 3D Structures]]
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[[Category: Mowbray, S L.]]
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== References ==
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[[Category: Unge, T.]]
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<references/>
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[[Category: Doxp/mep pathway]]
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__TOC__
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[[Category: ISPC]]
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</StructureSection>
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[[Category: Oxidoreductase]]
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[[Category: Large Structures]]
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[[Category: Rv2870c]]
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[[Category: Mycobacterium tuberculosis H37Rv]]
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[[Category: Tuberculosis]]
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[[Category: Bergfors T]]
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[[Category: Bjorkelid C]]
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[[Category: Jansson AM]]
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[[Category: Jones TA]]
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[[Category: Mowbray SL]]
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[[Category: Unge T]]

Current revision

Structure of Mycobacterium tuberculosis DXR in complex with a fosmidomycin analogue

PDB ID 3zi0

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