2ox4

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (10:49, 30 August 2023) (edit) (undo)
 
(14 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2ox4.jpg|left|200px]]<br /><applet load="2ox4" size="350" color="white" frame="true" align="right" spinBox="true"
 
-
caption="2ox4, resolution 1.80&Aring;" />
 
-
'''Crystal structure of putative dehydratase from Zymomonas mobilis ZM4'''<br />
 
-
==About this Structure==
+
==Crystal structure of putative dehydratase from Zymomonas mobilis ZM4==
-
2OX4 is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Zymomonas_mobilis Zymomonas mobilis] with <scene name='pdbligand=MG:'>MG</scene>, <scene name='pdbligand=CL:'>CL</scene> and <scene name='pdbligand=GOL:'>GOL</scene> as [http://en.wikipedia.org/wiki/ligands ligands]. Active as [http://en.wikipedia.org/wiki/Mandelate_racemase Mandelate racemase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=5.1.2.2 5.1.2.2] Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OX4 OCA].
+
<StructureSection load='2ox4' size='340' side='right'caption='[[2ox4]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
-
[[Category: Mandelate racemase]]
+
== Structural highlights ==
-
[[Category: Single protein]]
+
<table><tr><td colspan='2'>[[2ox4]] is a 8 chain structure with sequence from [https://en.wikipedia.org/wiki/Zymomonas_mobilis Zymomonas mobilis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OX4 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2OX4 FirstGlance]. <br>
 +
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.8&#8491;</td></tr>
 +
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2ox4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ox4 OCA], [https://pdbe.org/2ox4 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2ox4 RCSB], [https://www.ebi.ac.uk/pdbsum/2ox4 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2ox4 ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/2ox4 TOPSAN]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/Q5NN22_ZYMMO Q5NN22_ZYMMO]
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ox/2ox4_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2ox4 ConSurf].
 +
<div style="clear:both"></div>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Large Structures]]
[[Category: Zymomonas mobilis]]
[[Category: Zymomonas mobilis]]
-
[[Category: Almo, S C.]]
+
[[Category: Almo SC]]
-
[[Category: Bain, K.]]
+
[[Category: Bain K]]
-
[[Category: Burley, S K.]]
+
[[Category: Burley SK]]
-
[[Category: Freeman, J C.]]
+
[[Category: Freeman JC]]
-
[[Category: Gerlt, J.]]
+
[[Category: Gerlt J]]
-
[[Category: Gheyi, T.]]
+
[[Category: Gheyi T]]
-
[[Category: NYSGXRC, New York Structural GenomiX Research Consortium.]]
+
[[Category: Patskovsky Y]]
-
[[Category: Patskovsky, Y.]]
+
[[Category: Sauder JM]]
-
[[Category: Sauder, J M.]]
+
[[Category: Smith D]]
-
[[Category: Smith, D.]]
+
[[Category: Toro R]]
-
[[Category: Toro, R.]]
+
[[Category: Wasserman SR]]
-
[[Category: Wasserman, S R.]]
+
-
[[Category: CL]]
+
-
[[Category: GOL]]
+
-
[[Category: MG]]
+
-
[[Category: dehydratase]]
+
-
[[Category: enolase]]
+
-
[[Category: new york structural genomics research consortium]]
+
-
[[Category: new york structural genomix research consortium]]
+
-
[[Category: nysgrc]]
+
-
[[Category: nysgxrc]]
+
-
[[Category: protein structure initiative]]
+
-
[[Category: psi]]
+
-
[[Category: structural genomics]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Feb 21 18:23:29 2008''
+

Current revision

Crystal structure of putative dehydratase from Zymomonas mobilis ZM4

PDB ID 2ox4

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools