We apologize for Proteopedia being slow to respond. For the past two years, a new implementation of Proteopedia has been being built. Soon, it will replace this 18-year old system. All existing content will be moved to the new system at a date that will be announced here.

2oxs

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:26, 30 October 2024) (edit) (undo)
 
(16 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2oxs.gif|left|200px]]<br /><applet load="2oxs" size="350" color="white" frame="true" align="right" spinBox="true"
 
-
caption="2oxs, resolution 1.32&Aring;" />
 
-
'''Crytal Structure of the trypsin complex with benzamidine at high temperature (35 C)'''<br />
 
-
==About this Structure==
+
==Crystal Structure of the trypsin complex with benzamidine at high temperature (35 C)==
-
2OXS is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Bos_taurus Bos taurus] with <scene name='pdbligand=CA:'>CA</scene>, <scene name='pdbligand=SO4:'>SO4</scene> and <scene name='pdbligand=BEN:'>BEN</scene> as [http://en.wikipedia.org/wiki/ligands ligands]. Active as [http://en.wikipedia.org/wiki/Trypsin Trypsin], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.4.21.4 3.4.21.4] Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OXS OCA].
+
<StructureSection load='2oxs' size='340' side='right'caption='[[2oxs]], [[Resolution|resolution]] 1.32&Aring;' scene=''>
-
[[Category: Bos taurus]]
+
== Structural highlights ==
-
[[Category: Single protein]]
+
<table><tr><td colspan='2'>[[2oxs]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Bos_taurus Bos taurus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OXS OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2OXS FirstGlance]. <br>
-
[[Category: Trypsin]]
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.32&#8491;</td></tr>
-
[[Category: Alok, A.]]
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BEN:BENZAMIDINE'>BEN</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-
[[Category: Kaur, P.]]
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2oxs FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2oxs OCA], [https://pdbe.org/2oxs PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2oxs RCSB], [https://www.ebi.ac.uk/pdbsum/2oxs PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2oxs ProSAT]</span></td></tr>
-
[[Category: Sharma, S.]]
+
</table>
-
[[Category: Singh, N.]]
+
== Function ==
-
[[Category: Singh, T P.]]
+
[https://www.uniprot.org/uniprot/TRY1_BOVIN TRY1_BOVIN]
-
[[Category: Sinha, M.]]
+
== Evolutionary Conservation ==
-
[[Category: BEN]]
+
[[Image:Consurf_key_small.gif|200px|right]]
-
[[Category: CA]]
+
Check<jmol>
-
[[Category: SO4]]
+
<jmolCheckbox>
-
[[Category: benzamidine]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ox/2oxs_consurf.spt"</scriptWhenChecked>
-
[[Category: crystsl structure]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
-
[[Category: high temperature]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: trypsin]]
+
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2oxs ConSurf].
 +
<div style="clear:both"></div>
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Feb 21 18:23:44 2008''
+
==See Also==
 +
*[[Trypsin 3D structures|Trypsin 3D structures]]
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Bos taurus]]
 +
[[Category: Large Structures]]
 +
[[Category: Alok A]]
 +
[[Category: Kaur P]]
 +
[[Category: Sharma S]]
 +
[[Category: Singh N]]
 +
[[Category: Singh TP]]
 +
[[Category: Sinha M]]

Current revision

Crystal Structure of the trypsin complex with benzamidine at high temperature (35 C)

PDB ID 2oxs

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools