4how
From Proteopedia
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- | {{STRUCTURE_4how| PDB=4how | SCENE= }} | ||
- | ===The crystal structure of isomaltulose synthase from Erwinia rhapontici NX5=== | ||
- | {{ABSTRACT_PUBMED_24069347}} | ||
- | == | + | ==The crystal structure of isomaltulose synthase from Erwinia rhapontici NX5== |
- | [[4how]] is a 1 chain structure with sequence from [ | + | <StructureSection load='4how' size='340' side='right'caption='[[4how]], [[Resolution|resolution]] 1.70Å' scene=''> |
+ | == Structural highlights == | ||
+ | <table><tr><td colspan='2'>[[4how]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Erwinia_rhapontici Erwinia rhapontici]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4HOW OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4HOW FirstGlance]. <br> | ||
+ | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.7Å</td></tr> | ||
+ | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr> | ||
+ | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4how FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4how OCA], [https://pdbe.org/4how PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4how RCSB], [https://www.ebi.ac.uk/pdbsum/4how PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4how ProSAT]</span></td></tr> | ||
+ | </table> | ||
+ | == Function == | ||
+ | [https://www.uniprot.org/uniprot/D9MPF2_ERWRD D9MPF2_ERWRD] | ||
+ | <div style="background-color:#fffaf0;"> | ||
+ | == Publication Abstract from PubMed == | ||
+ | Sucrose isomerase NX-5 from Erwiniarhapontici efficiently catalyzes the isomerization of sucrose to isomaltulose (main product) and trehalulose (by-product). To investigate the molecular mechanism controlling sucrose isomer formation, we determined the crystal structures of native NX-5 and its mutant complexes E295Q/sucrose and D241A/glucose at 1.70 A, 1.70 A and 2.00 A, respectively. The overall structure and active site architecture of NX-5 resemble those of other reported sucrose isomerases. Strikingly, the substrate binding mode of NX-5 is also similar to that of trehalulose synthase from Pseudomonasmesoacidophila MX-45 (MutB). Detailed structural analysis revealed the catalytic RXDRX motif and the adjacent 10-residue loop of NX-5 and isomaltulose synthase PalI from Klebsiella sp. LX3 adopt a distinct orientation from those of trehalulose synthases. Mutations of the loop region of NX-5 resulted in significant changes of the product ratio between isomaltulose and trehalulose. The molecular dynamics simulation data supported the product specificity of NX-5 towards isomaltulose and the role of the loop(330-339) in NX-5 catalysis. This work should prove useful for the engineering of sucrose isomerase for industrial carbohydrate biotransformations. | ||
- | + | The Structural Basis of Erwinia rhapontici Isomaltulose Synthase.,Xu Z, Li S, Li J, Li Y, Feng X, Wang R, Xu H, Zhou J PLoS One. 2013 Sep 19;8(9):e74788. doi: 10.1371/journal.pone.0074788. PMID:24069347<ref>PMID:24069347</ref> | |
- | <ref | + | |
+ | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
+ | </div> | ||
+ | <div class="pdbe-citations 4how" style="background-color:#fffaf0;"></div> | ||
+ | |||
+ | ==See Also== | ||
+ | *[[Trehalulose synthase|Trehalulose synthase]] | ||
+ | == References == | ||
+ | <references/> | ||
+ | __TOC__ | ||
+ | </StructureSection> | ||
[[Category: Erwinia rhapontici]] | [[Category: Erwinia rhapontici]] | ||
- | [[Category: | + | [[Category: Large Structures]] |
- | [[Category: Li | + | [[Category: Li S]] |
- | [[Category: Xu | + | [[Category: Xu H]] |
- | [[Category: Xu | + | [[Category: Xu Z]] |
- | [[Category: Zhou | + | [[Category: Zhou J]] |
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Current revision
The crystal structure of isomaltulose synthase from Erwinia rhapontici NX5
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Categories: Erwinia rhapontici | Large Structures | Li S | Xu H | Xu Z | Zhou J