2p5m

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (10:54, 30 August 2023) (edit) (undo)
 
(11 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2p5m.gif|left|200px]]<br /><applet load="2p5m" size="350" color="white" frame="true" align="right" spinBox="true"
 
-
caption="2p5m, resolution 1.950&Aring;" />
 
-
'''C-terminal domain hexamer of AhrC bound with L-arginine'''<br />
 
-
==About this Structure==
+
==C-terminal domain hexamer of AhrC bound with L-arginine==
-
2P5M is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Bacillus_subtilis Bacillus subtilis] with <scene name='pdbligand=ARG:'>ARG</scene> as [http://en.wikipedia.org/wiki/ligand ligand]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2P5M OCA].
+
<StructureSection load='2p5m' size='340' side='right'caption='[[2p5m]], [[Resolution|resolution]] 1.95&Aring;' scene=''>
-
[[Category: Bacillus subtilis]]
+
== Structural highlights ==
-
[[Category: Single protein]]
+
<table><tr><td colspan='2'>[[2p5m]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_subtilis Bacillus subtilis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2P5M OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2P5M FirstGlance]. <br>
-
[[Category: Baumberg, S.]]
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.95&#8491;</td></tr>
-
[[Category: Garnett, J A.]]
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ARG:ARGININE'>ARG</scene></td></tr>
-
[[Category: Phillips, S E.V.]]
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2p5m FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2p5m OCA], [https://pdbe.org/2p5m PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2p5m RCSB], [https://www.ebi.ac.uk/pdbsum/2p5m PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2p5m ProSAT]</span></td></tr>
-
[[Category: Stockley, P G.]]
+
</table>
-
[[Category: ARG]]
+
== Function ==
-
[[Category: alpha-beta]]
+
[https://www.uniprot.org/uniprot/ARGR_BACSU ARGR_BACSU] Represses the synthesis of biosynthetic enzymes and activates the arginine catabolism. Controls the transcription of the two operons rocABC and rocDEF.
-
[[Category: dna binding protein]]
+
== Evolutionary Conservation ==
-
[[Category: l-arginine binding domain]]
+
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/p5/2p5m_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2p5m ConSurf].
 +
<div style="clear:both"></div>
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
The arginine repressor/activator protein (AhrC) from Bacillus subtilis belongs to a large family of multifunctional transcription factors that are involved in the regulation of bacterial arginine metabolism. AhrC interacts with operator sites in the promoters of arginine biosynthetic and catabolic operons, acting as a transcriptional repressor at biosynthetic sites and an activator of transcription at catabolic sites. AhrC is a hexamer of identical subunits, each having two domains. The C-terminal domains form the core of the protein and are involved in oligomerization and L-arginine binding. The N-terminal domains lie on the outside of the compact core and play a role in binding to 18 bp DNA operators called ARG boxes. The C-terminal domain of AhrC has been expressed, purified and characterized, and also crystallized as a hexamer with the bound corepressor L-arginine. Here, the crystal structure refined to 1.95 A is presented.
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Feb 21 18:26:04 2008''
+
Structure of the C-terminal effector-binding domain of AhrC bound to its corepressor L-arginine.,Garnett JA, Baumberg S, Stockley PG, Phillips SE Acta Crystallogr Sect F Struct Biol Cryst Commun. 2007 Nov 1;63(Pt, 11):918-21. Epub 2007 Oct 20. PMID:18007040<ref>PMID:18007040</ref>
 +
 
 +
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
 +
</div>
 +
<div class="pdbe-citations 2p5m" style="background-color:#fffaf0;"></div>
 +
 
 +
==See Also==
 +
*[[Arginine repressor 3D structures|Arginine repressor 3D structures]]
 +
== References ==
 +
<references/>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Bacillus subtilis]]
 +
[[Category: Large Structures]]
 +
[[Category: Baumberg S]]
 +
[[Category: Garnett JA]]
 +
[[Category: Phillips SEV]]
 +
[[Category: Stockley PG]]

Current revision

C-terminal domain hexamer of AhrC bound with L-arginine

PDB ID 2p5m

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools