Ribosomal protein S7

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[[Image:RPS7.png|left|200px|thumb|Crystal Structure of Ribosomal protein S7 from [[2zm6]], chain G]]
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<StructureSection load='1rss' size='350' side='right' scene='' caption='Ribosomal protein S7 (PDB code [[1rss]])'>
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{{STRUCTURE_1rss| PDB=1rss | SIZE=400| SCENE=|right|CAPTION=Ribosomal protein S7 from [[1rss]] }}
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== Function ==
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[[Ribosomal protein S7]] (RPS7) is one of the 22 proteins which belong to the 30S <scene name='Ribosomal_protein_S7/Cv/2'>small subunit</scene> of the [http://en.wikipedia.org/wiki/Bacteria bacterial] [[ribosome]] or the 30 proteins which belong to the 40S small subunit of the eukaryotic ribosome. It binds to 16S RRNA and is one of the proteins responsible for the initiation of the 30S particle assembly. It crosslinks with tRNA at the A- and P-sites<ref>PMID:7016341</ref>.
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[[Ribosomal protein S7]] (RPS7) is one of the 22 proteins which belong to the <scene name='Ribosomal_protein_S7/Cv/2'>small subunit</scene> of the [http://en.wikipedia.org/wiki/Bacteria bacterial] [[ribosome]]. It binds to 16S RRNA and is one of the proteins responsible for the initiation of the 30S particle assembly. It crosslinks with tRNA at the A- and P-sites. The images at the left and at the right correspond to one representative RPS7, ''i.e.'' the crystal structure of Ribosomal protein S7 from ''Thermus thermophilus'' ([[2zm6]], chain G).
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{{TOC limit|limit=2}}
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== Disease ==
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Mutations in mitochondrial RPS7 cause congenital sensorineural deafness and progressive hepatic and renal failure<ref>PMID:25556185</ref>.
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</StructureSection>
== 3D Structures of Ribosomal protein S7 ==
== 3D Structures of Ribosomal protein S7 ==
Updated on {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}}
Updated on {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}}
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{{#tree:id=OrganizedByTopic|openlevels=0|
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===RPS7===
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*Ribosomal protein S7
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[[1iqv]] – RPS7 – ''Pyrococcus horikoshii''<br />
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[[1rss]] – TtRPS7 - ''Thermus thermophilus''<br />
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[[1hus]] – RPS7 – ''Geobacillus stearothermophilus''
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===S7 in small ribosomal subunit===
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[[2zm6]], [[1n36]], [[1j5e]], [[3oge]], [[3ogy]], [[3ohc]], [[3ohd]], [[3ohy]], [[3oi0]], [[3oi2]], [[3oi4]], [[3oto]] - TtRPS7 in 30S ribosomal subunit+THX+16S RRNA – ''Thermus thermophilus''<br />
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[[2vqe]], [[2vqf]], [[2uuc]], [[2e5l]], [[2uu9]], [[2uua]], [[2uub]], [[3pyn]], [[3pyq]], [[3pys]], [[3pyu]] - TtRPS7 in 30S ribosomal subunit+16S RRNA+RNA fragment<br />
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[[3kc4]] – EcRPS5 in 30S ribosomal subunit - ''Escherichia coli''<br />
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[[3i1m]], [[3i1o]], [[3df1]], [[3df3]], [[2vho]], [[2vhp]], [[2avy]], [[2aw7]], [[1pnx]], [[3oaq]], [[3oar]], [[3ofa]], [[3ofb]], [[3ofo]], [[3ofp]], [[3ofx]], [[3ofy]], [[3or9]], [[3ora]] - EcRPS7 in 30S ribosomal subunit+16S RRNA<br />
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[[1i94]], [[1fka]], [[3uxs]], [[3uxt]], [[4dr1]] - TtRPS7 in 30S ribosomal subunit+16S RRNA<br />
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[[4duy]], [[4duz]], [[4dv0]], [[4dv1]], [[4dv2]], [[4dv3]], [[4dv4]], [[4dv5]], [[4dv6]], [[4dv7
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[[4dr4]], [[4b3m]], [[4b3r]], [[4b3s]], [[4b3t]] – TtRPS7 in 30S ribosomal subunit+16S RRNA + mRNA<br />
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[[1p87]], [[1p6g]] - EcRPS7 in 30S ribosomal subunit+16S RRNA – Cryo-EM<br />
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[[3bbn]] - RPS7 in 30S ribosomal subunit+16S RRNA – Cryo-EM – spinach
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===S7 in small + large ribosomal subunit===
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[[1ml5]] - EcRPS7 in 30S ribosomal subunit+50S ribosomal subunit+THX+chain release factor 2+P-site tRNA+tRNA Phe+mRNA fragment+23S RRNA+5S RRNA+16S RRNA - EM
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===S7 in small ribosomal subunit+ chain release factor (RF)===
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[[3mr8]], [[3ms0]] – TtRPS7 in 30S ribosomal subunit+THX+chain release factor 1+P-site tRNA+mRNA+16S RRNA <br />
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[[3d5a]], [[3d5c]] - TtRPS7 in 30S ribosomal subunit+THX+chain release factor 1+P-site tRNA+E-site tRNA+mRNA +16S RRNA<br />
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[[3zvo]] – TtRPS7 in 30S ribosomal subunit+THX+P-site tRNA Met +mRNA +16S RRNA+chain release factor 3<br />
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[[2b64]] - TtRPS5 in 30S ribosomal subunit+THX+P-site tRNA Phe+E-site tRNA Phe+mRNA +16S RRNA+chain release factor 1<br />
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[[2b9m]] - TtRPS5 in 30S ribosomal subunit+THX+P-site tRNA Phe+E-site tRNA Phe+mRNA +16S RRNA+chain release factor 2<br />
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[[2x9r]], [[2x9t]], [[2wh1]], [[2wh3]] - TtRPS7 in 30S ribosomal subunit+THX+chain release factor 2+P-site tRNA+mRNA +16S RRNA<br />
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[[3f1e]], [[3f1g]] - TtRPS7 in 30S ribosomal subunit+THX+chain release factor 2+P-site tRNA+E-site tRNA +16S RRNA<br />
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[[3uoq]] - EcRPS7 + 16S RRNA + mRNA + peptide chain release factor<br />
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[[4kfh]], [[4kfk]] - TtRPS7 in 30S ribosomal subunit+16S RRNA+ RF-2 + mRNA+ P-site tRNA fMet<br />
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===S7 in small ribosomal subunit+tRNA+mRNA===
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[[2hgi]] - TtRPS7 in 30S ribosomal subunit+16S RRNA+tRNA Phe+tRNA fMet<br />
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[[4l6k]], [[4l6m]] - TtRPS7 in 30S ribosomal subunit+16S RRNA+tRNA Phe+tRNA<br />
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[[2hgp]] - TtRPS7 in 30S ribosomal subunit+16S RRNA+tRNA Phe+mRNA<br />
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[[3t1h]], [[3t1y]] - TtRPS7 in 30S ribosomal subunit+16S RRNA+tRNA Lys +mRNA<br />
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[[3tvf]], [[3tvg]], [[3uyd]], [[3uyf]] - TtRPS7 in 30S ribosomal subunit+16S RRNA+tRNA Leu + tRNA fMet + mRNA<br />
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[[3zn7]], [[3znd]] - TtRPS7 in 30S ribosomal subunit+16S RRNA+A-site tRNA Ile agmatidine + E-site tRNA Ile agmatidine + mRNA<br />
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[[3uz6]], [[3uz7]], [[3uzg]], [[3uzi]] - TtRPS7 in 30S ribosomal subunit+16S RRNA+tRNA Tyr + tRNA fMet + mRNA<br />
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[[2i2p]], [[2i2u]] - EcRPS7 in 30S ribosomal subunit+16S RRNA+tRNA Phe+mRNA<br />
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[[2hgr]], [[3v6u]], [[3v6v]], [[4ej9]], [[4eja]] - TtRPS7 in 30S ribosomal subunit+16S RRNA+tRNA Phe+tRNA fMet+mRNA<br />
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[[1yl4]] – TtRPS7 in 30S ribosomal subunit+ tRNA Phe+16S RRNA+THRS mRNA operator<br />
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[[1pns]] - EcRPS7 in 30S ribosomal subunit+ tRNA Phe+16S RRNA+mRNA <br />
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[[3j0u]], [[3j0v]], [[3j0x]], [[3j0z]], [[3j10]], [[3j20]] – EcRPS7 in 30S ribosomal subunit+ A-site tRNA + P-site tRNA +16S RRNA+mRNA – Cryo-EM<br />
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[[3j13]] – EcRPS7 in 30S ribosomal subunit+ P-site tRNA +16S RRNA+mRNA – Cryo-EM<br />
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[[1xnq]], [[1xnr]] - TtRPS7 in 30S ribosomal subunit+THX+mRNA+tRNA anticodon+16S RRNA<br />
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[[4gkj]], [[4gkk]] - TtRPS7 in 30S ribosomal subunit +16S RRNA +THX + mRNA + tRNA Met<br />
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[[4jv5]], [[4jya]], [[4k0k]], [[4k0l]] - TtRPS7 in 30S ribosomal subunit +16S RRNA +THX + mRNA + ASL-tRNA <br />
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===S7 in small ribosomal subunit+A-site tRNA===
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[[2uxd]], [[2uxc]] - TtRPS7 in 30S ribosomal subunit+THX+A-site mRNA CGGG+tRNA anticodon+16S RRNA<br />
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[[1n32]], [[1n33]] - TtRPS7 in 30S ribosomal subunit+THX+A-site mRNA fragment+tRNA anticodon+16S RRNA<br />
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[[1n34]] - TtRPS7 in 30S ribosomal subunit+THX+A-site mRNA fragment +16S RRNA<br />
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[[1xmo]], [[1xmq]] - TtRPS7 in 30S ribosomal subunit+THX+A-site mRNA+tRNA anticodon+16S RRNA<br />
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[[2uxb]] - TtRPS7 in 30S ribosomal subunit+THX+A-site mRNA GGGU+tRNA anticodon+16S RRNA
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===S7 in small ribosomal subunit+P-site tRNA===
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[[3i8g]] - TtRPS7 in 30S ribosomal subunit+P-site tRNA+mRNA +16S RRNA<br />
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[[3i8h]], [[3i9b]], [[3i9d]] - TtRPS7 in 30S ribosomal subunit+THX+P-site tRNA+mRNA +16S RRNA<br />
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[[1ibk]] - TtRPS7 in 30S ribosomal subunit+THX+P-site mRNA fragment +16S RRNA<br />
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[[2wwl]] - EcRPS7 in 30S ribosomal subunit+Poly-Ala chain+P-site tRNA+mRNA +16S RRNA - ''Escherichia coli''<br />
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[[3i1q]] - EcRPS7 in 30S ribosomal subunit+P-site tRNA hairpin+mRNA<br />
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[[3i1s]], [[3i1z]], [[3i21]] - Ecv in 30S ribosomal subunit+P-site tRNA hairpin+mRNA +16S RNA
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===S7 in small ribosomal subunit+A-site tRNA+P-site tRNA===
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[[1ibl]], [[1ibm]] - TtRPS7 in 30S ribosomal subunit+THX+A-site mRNA fragment+P-site mRNA fragment+tRNA anticodon+16S RRNA
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===S7 in small ribosomal subunit+P-site tRNA+E-site tRNA===
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[[2ow8]] - TtRPS7 in 30S ribosomal subunit+THX+P-site tRNA Phe+E-site tRNA+mRNA +16S RRNA<br />
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[[2b9o]] - TtRPS7 in 30S ribosomal subunit+THX+P-site tRNA Phe+E-site tRNA Phe+mRNA +16S RRNA<br />
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[[2qnh]] - TtRPS7 in 30S ribosomal subunit+THX+P-site tRNA+E-site tRNA+mRNA +16S RRNA<br />
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[[2wdg]], [[2wdh]], [[2wdk]], [[2wdm]] - TtRPS7 in 30S ribosomal subunit+THX+P-site tRNA+E-site tRNA+mRNA +16S RRNA+tRNA Phe
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===S7 in small ribosomal subunit+A-site tRNA+P-site tRNA+E-site tRNA===
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[[2gy9]], [[2gyb]] - EcRPS7 in 30S ribosomal subunit+P-site tRNA+A-site tRNA+E-site tRNA+mRNA +16S RRNA – Cryo-EM<br />
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[[1jgo]], [[1jgp]], [[1jgq]], [[1gix]] - TtRPS7 in 30S ribosomal subunit+P-site tRNA+A-site tRNA+E-site tRNA+tRNA Phe+mRNA +16S RRNA<br />
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[[4k0p]] - TtRPS7 in 30S ribosomal subunit+P-site tRNA+A-site tRNA+E-site tRNA +mRNA +16S RRNA<br />
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[[3e1a]], [[3e1c]] - EcRPS7 in 30S ribosomal subunit+P-site tRNA+A-site tRNA+E-site tRNA+mRNA +16S RRNA
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===S7 in small ribosomal subunit + antibiotics===
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[[1i95]], [[1i97]], [[2hhh]], [[2f4v]], [[3knn]], [[4dr2]], [[4dr3]] - TtRPS7 in 30S ribosomal subunit+16S RRNA+antibiotic<br />
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[[1hnw]], [[1hnx]], [[1hnz]], [[1fjg]], [[4khp]] - TtRPS7 in 30S ribosomal subunit+16S RRNA+mRNA fragment+antibiotic<br />
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[[2qbb]], [[2qb9]], [[1vs5]], [[1vs7]], [[2qan]], [[2qal]], [[2qou]], [[2qow]], [[2qoy]], [[2qp0]], [[2z4k]], [[2z4m]] - EcRPS7 in 30S ribosomal subunit+16S RRNA+antibiotic<br />
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[[3sfs]] – EcRPS7 in 30S ribosomal subunit+16S RRNA+ mRNA + RF-3 + antibiotic<br />
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[[4gaq]], 4gas]] – EcRPS7 in 30S ribosomal subunit+16S RRNA+ mRNA + antibiotic<br />
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[[2j00]], [[2j02]] - TtRPS7 in 30S ribosomal subunit+16S RRNA+paromomycin+P-site tRNA fMet+E-site tRNA Phe+mRNA<br />
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[[3knl]], [[3knm]], [[3knj]], [[3knh]] - TtRPS7 in 30S ribosomal subunit+P-site tRNA+A-site tRNA+E-site tRNA+mRNA +16S RRNA+ antibiotics<br />
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[[3uz3]], [[3uz4]] - TtRPS7 in 30S ribosomal subunit+16S RRNA+tRNA Leu + tRNA fMet + mRNA + paromomycin<br />
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[[4g5k]], [[4g5m]], [[4g5t]], [[4g5v]] - TtRPS7 in 30S ribosomal subunit+16S RRNA + tRNA fMet + mRNA + antibiotics<br />
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[[3uzl]], [[3uzm]] - TtRPS7 in 30S ribosomal subunit+16S RRNA+tRNA Tyr + tRNA fMet + mRNA + paromomycin
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===S7 in small ribosomal subunit + ribosome recycling factor===
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[[2qbd]], [[2qbf]] - EcRPS7 in 30S ribosomal subunit+16S RRNA+ribosome recycling factor<br />
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[[3r8n]], [[3r8o]], [[4gd1]], [[4gd2]] – EcRPS6 in 30S ribosomal subunit+16S RRNA+ribosome recycling factor + mRNA + tRNA<br />
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[[2qbh]], [[2qbj]] - EcRPS7 in 30S ribosomal subunit+16S RRNA+ribosome recycling factor+gentamicin<br />
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[[2v46]], [[2v48]] - TtRPS7 in 30S ribosomal subunit+16S RRNA+ribosome recycling factor+P-site tRNA Phe+mRNA+tRNA fMet
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===S7 in small ribosomal subunit + elongation factor (EF)===
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[[2wri]], [[2wrk]], [[2xsy]], [[2xuy]] - TtRPS7 in 30S ribosomal subunit+THX+P-site tRNA+mRNA +16S RRNA+elongation factor G<br />
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[[2wrn]], [[2wrq]] - TtRPS7 in 30S ribosomal subunit+THX+A-site tRNA+mRNA +16S RRNA+elongation factor TU-4<br />
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[[2xqd]] – TtRPS7 in 30S ribosomal subunit+THX+E-site tRNA+mRNA +16S RRNA+elongation factor TU-B<br />
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[[3fic]] - TtRPS7 in 30S ribosomal subunit+THX+A-site tRNA+P-site tRNA+E-site tRNA+mRNA codon+16S RRNA+elongation factor TU-A<br />
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[[4abr]] – TtRPS7 in 30S ribosomal subunit+THX + E/P-site tRNA fMet +mRNA codon+16S RRNA+elongation factor TU<br />
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[[3izv]] – EcRPS7 in 30S ribosomal subunit+A/T-site tRNA Phe +16S RRNA+elongation factor TU<br />
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[[3j18]] - EcRPS7 in 30S ribosomal subunit+A/T-site tRNA Phe +16S RRNA+ mRNA + SSRA-binding protein + formyl-Met specific initiator tRNA + elongation factor G – Cryo-EM<br />
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[[3izw]] – EcRPS7 in 30S ribosomal subunit+A-site tRNA Phe +mRNA +16S RRNA+elongation factor TU<br />
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[[2y0u]], [[2y0w]], [[2y0y]], [[2y10]], [[2y12]], [[2y14]], [[2y16]], [[2y18]] -TtRPS7 i 30S subunit+THX+A-site t`RNA+E-site tRNA+mRNA codon+16S RRNA+elongation factor TU<br />
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[[3fih]] - EcRPS7 in 30S ribosomal subunit+A-site tRNA Phe+P-site tRNA+mRNA +16S RRNA+elongation factor TU<br />
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[[3huw]], [[3huy]] - TtRPS7 in 30S ribosomal subunit+THX+tRNA-Met+mRNA +16S RRNA+elongation factor P<br />
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[[4b8f]], [[4b8h]] - TtRPS7 in 30S ribosomal subunit+THX+RNA+mRNA +16S RRNA+elongation factor G<br />
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[[4btc]], [[4kdg]], [[4kdj]] - TtRPS7 in 30S ribosomal subunit+THX+RNA +16S RRNA+elongation factor G<br />
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[[4juw]] - TtRPS7 in 30S ribosomal subunit+THX+ tRNA Phe +16S RRNA + mRNA +elongation factor G<br />
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[[4kbt]], [[4kbv]], [[4kcy]], [[4kd0]], [[4kd8]], [[4kda]] - TtRPS7 in 30S ribosomal subunit+THX+ tRNA Met +16S RRNA + mRNA + viomycin + elongation factor G<br />
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[[4kiy]], [[4kj0]], [[4kj2]], [[4kj4]], [[4kj6]], [[4kj8]], [[4kja]], [[4kjc]] - EcRPS7 in 30S ribosomal subunit +16S RRNA + viomycin + elongation factor G<br />
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===S7 in small ribosomal subunit + translation initiation factor===
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[[1i96]] - TtRPS7 in 30S ribosomal subunit+THX+IF3+16S RRNA<br />
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[[1hr0]] - TtRPS7 in 30S ribosomal subunit+THX+IF+16S RRNA
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===S7 in small ribosomal subunit + various proteins===
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[[3kiq]], [[3kis]], [[3kiu]], [[3kix]] - TtRPS7 in 30S ribosomal subunit+toxin RelE+16S RRNA<br />
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[[4dh9]], [[4dhb]] - TtRPS7 in 30S ribosomal subunit +16S RRNA+mRNA+P-site tRNA fMet +THX + YAEJ<br />
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[[1voq]], [[1vos]], [[1vov]], [[1vox]], [[1voz]] - EcRPS7 in 30S ribosomal subunit+protein Y+16S RRNA<br />
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[[3j36]] - EcRPS7 in 30S ribosomal subunit+ tetracycline resistance protein +16S RRNA + mRNA + P-tRNA – Cryo-EM<br />
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[[3gty]] – RPS7+trigger factor – ''Thermotoga maritima''<br />
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[[3iz6]] – RPS7 in 40S ribosomal subunit+RACK1 – wheat – Cryo EM <br />
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[[2xzm]], [[2xzn]] - RPS7 in 40S subnit+18S RRNA+RACK1 - ''Tetrahymena thermophila''<br />
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[[1x18]] – TtRPS7+TtRPS2+TtRPS11+TtRPS18+ERA GTPase+16S RRNA fragment<br />
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[[2xfz]], [[2xg1]] – TtRPS7 in 30S ribosomal subunit+colicin E3+E-site tRNA+mRNA+16S RRNA<br />
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[[3j00]] – EcRPS7 + 16S RRNA + FTSQ + apolipoprotein A-I<br />
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[[2ykr]] – EcRPS7 + 16S RRNA + GMPPNP + GTPase RSGA<br />
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[[4a2i]] – EcRPS7 + 16S RRNA + GTPase RSGA – Cryo EM<br />
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[[4adv]] - EcRPS5 + 16S RRNA + methyltransferase – Cryo EM<br />
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[[3v22]], [[3v24]], [[3v26]], [[3v28]] – TtRPS7 in 30S ribosomal subunit +16S RRNA +THX + modulation factor<br />
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[[3v2c]], [[3v2e]] – TtRPS7 in 30S ribosomal subunit +16S RRNA +THX + ribosome-associated inhibitor<br />
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[[3izb]] - RPS7 in 40S ribosomal subunit +RACK1 – yeast – Cryo EM<br />
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[[3u5c]], [[3u5g]] - yRPS7 in 40S ribosomal subunit+ RACK1 + suppressor protein SMT1<br />
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===S7 in part of small ribosomal subunit===
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[[1qd7]] – TtRPS7+TtRPS4+TtRPS6+TtRPS5+TtRPS8+TtRPS15+TtRPS17+TtRPS20+16S RRNA fragment<br />
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[[1dv4]] – GsRPS7+TtRPS5+16S RRNA
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===S7 in small 40S ribosomal subunit===
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**[[1iqv]] – RPS7 – ''Pyrococcus horikoshii''<br />
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**[[1rss]] – TtRPS7 - ''Thermus thermophilus''<br />
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**[[1hus]] – RPS7 – ''Geobacillus stearothermophilus''<br />
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**[[6jmk]] – RPS7 - ''Mycobacterium tuberculosis''<br />
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**[[3gty]] – RPS7 + trigger factor – ''Thermotoga maritima''<br />
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[[3j38]] - RPS7 in 40S ribosomal subunit + EF-2 + guanine nucleotide-binding protein – ''Drosophila melanogaster'' – Cryo-EM<br />
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*Ribosomal protein S7 in part of small ribosomal subunit
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[[3j3a]] - RPS7 in 40S ribosomal subunit + EF-2 + guanine nucleotide-binding protein – human – Cryo-EM<br />
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[[4kzx]] - rRPS7 in 40S ribosomal subunit+ RACK1 + EIF1 – rabbit – Cryo-EM<br />
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[[4kzy]] - rRPS7 in 40S ribosomal subunit+ RACK1 + EIF1 + EIF1A – Cryo-EM<br />
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[[4kzz]] - rRPS7 in 40S ribosomal subunit+ RACK1 + EIF1A + initiator tRNA – Cryo-EM<br /
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**[[1qd7]] – TtRPS7 + TtRPS4 +TtRPS6 +TtRPS5 +TtRPS8 +TtRPS15 +TtRPS17 +TtRPS20 +16S RRNA fragment<br />
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**[[1x18]] - TtRPS7+ TtRPS2 +TtRPS11 +TtRPS18 + RNA + GTP-binding protein – Cryo EM<br />
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**[[1dv4]] – GsRPS7+TtRPS5+16S RRNA
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}}
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== References ==
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<references/>
[[Category:Topic Page]]
[[Category:Topic Page]]

Current revision

Ribosomal protein S7 (PDB code 1rss)

Drag the structure with the mouse to rotate

3D Structures of Ribosomal protein S7

Updated on 24-December-2019

References

  1. ↑ Dean D, Yates JL, Nomura M. Identification of ribosomal protein S7 as a repressor of translation within the str operon of E. coli. Cell. 1981 May;24(2):413-9. PMID:7016341
  2. ↑ Menezes MJ, Guo Y, Zhang J, Riley LG, Cooper ST, Thorburn DR, Li J, Dong D, Li Z, Glessner J, Davis RL, Sue CM, Alexander SI, Arbuckle S, Kirwan P, Keating BJ, Xu X, Hakonarson H, Christodoulou J. Mutation in mitochondrial ribosomal protein S7 (MRPS7) causes congenital sensorineural deafness, progressive hepatic and renal failure and lactic acidemia. Hum Mol Genet. 2015 Apr 15;24(8):2297-307. doi: 10.1093/hmg/ddu747. Epub 2015 Jan, 2. PMID:25556185 doi:http://dx.doi.org/10.1093/hmg/ddu747

Proteopedia Page Contributors and Editors (what is this?)

Michal Harel, Alexander Berchansky, Joel L. Sussman

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