2p78

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:59, 25 October 2023) (edit) (undo)
 
(14 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2p78.jpg|left|200px]]<br /><applet load="2p78" size="350" color="white" frame="true" align="right" spinBox="true"
 
-
caption="2p78, resolution 1.75&Aring;" />
 
-
'''Crystal structure of TTHB049 from Thermus thermophilus HB8'''<br />
 
-
==About this Structure==
+
==Crystal structure of TTHB049 from Thermus thermophilus HB8==
-
2P78 is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus] with <scene name='pdbligand=NA:'>NA</scene> and <scene name='pdbligand=GOL:'>GOL</scene> as [http://en.wikipedia.org/wiki/ligands ligands]. Active as [http://en.wikipedia.org/wiki/Alpha-ribazole_phosphatase Alpha-ribazole phosphatase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.3.73 3.1.3.73] Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2P78 OCA].
+
<StructureSection load='2p78' size='340' side='right'caption='[[2p78]], [[Resolution|resolution]] 1.75&Aring;' scene=''>
-
[[Category: Alpha-ribazole phosphatase]]
+
== Structural highlights ==
-
[[Category: Single protein]]
+
<table><tr><td colspan='2'>[[2p78]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermus_thermophilus_HB8 Thermus thermophilus HB8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2P78 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2P78 FirstGlance]. <br>
-
[[Category: Thermus thermophilus]]
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.75&#8491;</td></tr>
-
[[Category: Kageyama, Y.]]
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
-
[[Category: Kunishima, N.]]
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2p78 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2p78 OCA], [https://pdbe.org/2p78 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2p78 RCSB], [https://www.ebi.ac.uk/pdbsum/2p78 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2p78 ProSAT], [https://www.topsan.org/Proteins/RSGI/2p78 TOPSAN]</span></td></tr>
-
[[Category: Matsuura, Y.]]
+
</table>
-
[[Category: RSGI, RIKEN Structural Genomics/Proteomics Initiative.]]
+
== Function ==
-
[[Category: Sugahara, M.]]
+
[https://www.uniprot.org/uniprot/Q53WB3_THET8 Q53WB3_THET8]
-
[[Category: Taketa, M.]]
+
== Evolutionary Conservation ==
-
[[Category: GOL]]
+
[[Image:Consurf_key_small.gif|200px|right]]
-
[[Category: NA]]
+
Check<jmol>
-
[[Category: hydrolase]]
+
<jmolCheckbox>
-
[[Category: national project on protein structural and functional analyses]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/p7/2p78_consurf.spt"</scriptWhenChecked>
-
[[Category: nppsfa]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: riken structural genomics/proteomics initiative]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: rsgi]]
+
</jmolCheckbox>
-
[[Category: structural genomics]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2p78 ConSurf].
-
[[Category: thermus thermophilus hb8]]
+
<div style="clear:both"></div>
-
 
+
__TOC__
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Feb 21 18:26:40 2008''
+
</StructureSection>
 +
[[Category: Large Structures]]
 +
[[Category: Thermus thermophilus HB8]]
 +
[[Category: Kageyama Y]]
 +
[[Category: Kunishima N]]
 +
[[Category: Matsuura Y]]
 +
[[Category: Sugahara M]]
 +
[[Category: Taketa M]]

Current revision

Crystal structure of TTHB049 from Thermus thermophilus HB8

PDB ID 2p78

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools