2p8e

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (10:57, 30 August 2023) (edit) (undo)
 
(19 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2p8e.jpg|left|200px]]<br /><applet load="2p8e" size="350" color="white" frame="true" align="right" spinBox="true"
 
-
caption="2p8e, resolution 1.816&Aring;" />
 
-
'''Crystal structure of the serine/threonine phosphatase domain of human PPM1B'''<br />
 
-
==About this Structure==
+
==Crystal structure of the serine/threonine phosphatase domain of human PPM1B==
-
2P8E is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens] with <scene name='pdbligand=MG:'>MG</scene> as [http://en.wikipedia.org/wiki/ligand ligand]. Active as [http://en.wikipedia.org/wiki/Phosphoprotein_phosphatase Phosphoprotein phosphatase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.3.16 3.1.3.16] Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2P8E OCA].
+
<StructureSection load='2p8e' size='340' side='right'caption='[[2p8e]], [[Resolution|resolution]] 1.82&Aring;' scene=''>
-
[[Category: Homo sapiens]]
+
== Structural highlights ==
-
[[Category: Phosphoprotein phosphatase]]
+
<table><tr><td colspan='2'>[[2p8e]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2P8E OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2P8E FirstGlance]. <br>
-
[[Category: Single protein]]
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.816&#8491;</td></tr>
-
[[Category: Almo, S C.]]
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=OCS:CYSTEINESULFONIC+ACID'>OCS</scene></td></tr>
-
[[Category: Bain, K T.]]
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2p8e FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2p8e OCA], [https://pdbe.org/2p8e PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2p8e RCSB], [https://www.ebi.ac.uk/pdbsum/2p8e PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2p8e ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/2p8e TOPSAN]</span></td></tr>
-
[[Category: Bonanno, J B.]]
+
</table>
-
[[Category: Burley, S K.]]
+
== Disease ==
-
[[Category: Freeman, J.]]
+
[https://www.uniprot.org/uniprot/PPM1B_HUMAN PPM1B_HUMAN] 2p21 microdeletion syndrome.
-
[[Category: Lau, C.]]
+
== Function ==
-
[[Category: NYSGXRC, New York Structural GenomiX Research Consortium.]]
+
[https://www.uniprot.org/uniprot/PPM1B_HUMAN PPM1B_HUMAN] Enzyme with a broad specificity. Dephosphorylates CDK2 and CDK6 in vitro. Dephosphorylates PRKAA1 and PRKAA2. Inhibits TBK1-mediated antiviral signaling by dephosphorylating it at 'Ser-172'. Plays an important role in the termination of TNF-alpha-mediated NF-kappa-B activation through dephosphorylating and inactivating IKBKB/IKKB.<ref>PMID:18930133</ref> <ref>PMID:22750291</ref>
-
[[Category: Sauder, M J.]]
+
== Evolutionary Conservation ==
-
[[Category: Smith, D.]]
+
[[Image:Consurf_key_small.gif|200px|right]]
-
[[Category: Wasserman, S.]]
+
Check<jmol>
-
[[Category: Xu, W.]]
+
<jmolCheckbox>
-
[[Category: MG]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/p8/2p8e_consurf.spt"</scriptWhenChecked>
-
[[Category: hydrolase]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: new york structural genomix research consortium]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: nysgxrc]]
+
</jmolCheckbox>
-
[[Category: protein structure initiative]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2p8e ConSurf].
-
[[Category: psi-2]]
+
<div style="clear:both"></div>
-
[[Category: structural genomics]]
+
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
The New York SGX Research Center for Structural Genomics (NYSGXRC) of the NIGMS Protein Structure Initiative (PSI) has applied its high-throughput X-ray crystallographic structure determination platform to systematic studies of all human protein phosphatases and protein phosphatases from biomedically-relevant pathogens. To date, the NYSGXRC has determined structures of 21 distinct protein phosphatases: 14 from human, 2 from mouse, 2 from the pathogen Toxoplasma gondii, 1 from Trypanosoma brucei, the parasite responsible for African sleeping sickness, and 2 from the principal mosquito vector of malaria in Africa, Anopheles gambiae. These structures provide insights into both normal and pathophysiologic processes, including transcriptional regulation, regulation of major signaling pathways, neural development, and type 1 diabetes. In conjunction with the contributions of other international structural genomics consortia, these efforts promise to provide an unprecedented database and materials repository for structure-guided experimental and computational discovery of inhibitors for all classes of protein phosphatases.
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Feb 21 18:26:59 2008''
+
Structural genomics of protein phosphatases.,Almo SC, Bonanno JB, Sauder JM, Emtage S, Dilorenzo TP, Malashkevich V, Wasserman SR, Swaminathan S, Eswaramoorthy S, Agarwal R, Kumaran D, Madegowda M, Ragumani S, Patskovsky Y, Alvarado J, Ramagopal UA, Faber-Barata J, Chance MR, Sali A, Fiser A, Zhang ZY, Lawrence DS, Burley SK J Struct Funct Genomics. 2007 Sep;8(2-3):121-40. Epub 2007 Dec 5. PMID:18058037<ref>PMID:18058037</ref>
 +
 
 +
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
 +
</div>
 +
<div class="pdbe-citations 2p8e" style="background-color:#fffaf0;"></div>
 +
== References ==
 +
<references/>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Homo sapiens]]
 +
[[Category: Large Structures]]
 +
[[Category: Almo SC]]
 +
[[Category: Bain KT]]
 +
[[Category: Bonanno JB]]
 +
[[Category: Burley SK]]
 +
[[Category: Freeman J]]
 +
[[Category: Lau C]]
 +
[[Category: Sauder JM]]
 +
[[Category: Smith D]]
 +
[[Category: Wasserman S]]
 +
[[Category: Xu W]]

Current revision

Crystal structure of the serine/threonine phosphatase domain of human PPM1B

PDB ID 2p8e

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools