2pd2

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (09:00, 25 October 2023) (edit) (undo)
 
(13 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2pd2.jpg|left|200px]]<br /><applet load="2pd2" size="350" color="white" frame="true" align="right" spinBox="true"
 
-
caption="2pd2, resolution 2.06&Aring;" />
 
-
'''Crystal structure of (ST0148) conserved hypothetical from Sulfolobus Tokodaii Strain7'''<br />
 
-
==About this Structure==
+
==Crystal structure of (ST0148) conserved hypothetical from Sulfolobus Tokodaii Strain7==
-
2PD2 is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Sulfolobus_tokodaii Sulfolobus tokodaii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PD2 OCA].
+
<StructureSection load='2pd2' size='340' side='right'caption='[[2pd2]], [[Resolution|resolution]] 2.06&Aring;' scene=''>
-
[[Category: Single protein]]
+
== Structural highlights ==
-
[[Category: Sulfolobus tokodaii]]
+
<table><tr><td colspan='2'>[[2pd2]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Sulfurisphaera_tokodaii_str._7 Sulfurisphaera tokodaii str. 7]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PD2 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2PD2 FirstGlance]. <br>
-
[[Category: Agari, Y.]]
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.06&#8491;</td></tr>
-
[[Category: Jeyakanthan, J.]]
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2pd2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2pd2 OCA], [https://pdbe.org/2pd2 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2pd2 RCSB], [https://www.ebi.ac.uk/pdbsum/2pd2 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2pd2 ProSAT], [https://www.topsan.org/Proteins/RSGI/2pd2 TOPSAN]</span></td></tr>
-
[[Category: Kanaujia, S P.]]
+
</table>
-
[[Category: RSGI, RIKEN Structural Genomics/Proteomics Initiative.]]
+
== Function ==
-
[[Category: Rafi, Z A.]]
+
[https://www.uniprot.org/uniprot/Q976P3_SULTO Q976P3_SULTO]
-
[[Category: Sekar, K.]]
+
== Evolutionary Conservation ==
-
[[Category: national project on protein structural and functional analyses]]
+
[[Image:Consurf_key_small.gif|200px|right]]
-
[[Category: nppsfa]]
+
Check<jmol>
-
[[Category: riken structural genomics/proteomics initiative]]
+
<jmolCheckbox>
-
[[Category: rsgi]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/pd/2pd2_consurf.spt"</scriptWhenChecked>
-
[[Category: structural genomics]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: unknown function]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
 
+
</jmolCheckbox>
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Feb 21 18:28:21 2008''
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2pd2 ConSurf].
 +
<div style="clear:both"></div>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Large Structures]]
 +
[[Category: Sulfurisphaera tokodaii str. 7]]
 +
[[Category: Agari Y]]
 +
[[Category: Jeyakanthan J]]
 +
[[Category: Kanaujia SP]]
 +
[[Category: Rafi ZA]]
 +
[[Category: Sekar K]]

Current revision

Crystal structure of (ST0148) conserved hypothetical from Sulfolobus Tokodaii Strain7

PDB ID 2pd2

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools