4m4d
From Proteopedia
(Difference between revisions)
(5 intermediate revisions not shown.) | |||
Line 1: | Line 1: | ||
- | {{STRUCTURE_4m4d| PDB=4m4d | SCENE= }} | ||
- | ===Crystal structure of lipopolysaccharide binding protein=== | ||
- | {{ABSTRACT_PUBMED_24120359}} | ||
- | == | + | ==Crystal structure of lipopolysaccharide binding protein== |
- | [[http://www.uniprot.org/uniprot/LBP_MOUSE LBP_MOUSE | + | <StructureSection load='4m4d' size='340' side='right'caption='[[4m4d]], [[Resolution|resolution]] 2.91Å' scene=''> |
+ | == Structural highlights == | ||
+ | <table><tr><td colspan='2'>[[4m4d]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4M4D OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4M4D FirstGlance]. <br> | ||
+ | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.909Å</td></tr> | ||
+ | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=PC1:1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE'>PC1</scene></td></tr> | ||
+ | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4m4d FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4m4d OCA], [https://pdbe.org/4m4d PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4m4d RCSB], [https://www.ebi.ac.uk/pdbsum/4m4d PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4m4d ProSAT]</span></td></tr> | ||
+ | </table> | ||
+ | == Function == | ||
+ | [https://www.uniprot.org/uniprot/LBP_MOUSE LBP_MOUSE] Binds to the lipid A moiety of bacterial lipopolysaccharides (LPS), a glycolipid present in the outer membrane of all Gram-negative bacteria, and acts as an affinity enhancer for CD14, facilitating its association with LPS (By similarity). | ||
+ | <div style="background-color:#fffaf0;"> | ||
+ | == Publication Abstract from PubMed == | ||
+ | Lipopolysaccharide (LPS) binding protein (LBP) is an acute-phase protein that initiates an immune response after recognition of bacterial LPS. Here, we report the crystal structure of murine LBP at 2.9 A resolution. Several structural differences were observed between LBP and the related bactericidal/permeability-increasing protein (BPI), and the LBP C-terminal domain contained a negatively charged groove and a hydrophobic "phenylalanine core." A frequent human LBP SNP (allelic frequency 0.08) affected this region, potentially generating a proteinase cleavage site. The mutant protein had a reduced binding capacity for LPS and lipopeptides. SNP carriers displayed a reduced cytokine response after in vivo LPS exposure and lower cytokine concentrations in pneumonia. In a retrospective trial, the LBP SNP was associated with increased mortality rates during sepsis and pneumonia. Thus, the structural integrity of LBP may be crucial for fighting infections efficiently, and future patient stratification might help to develop better therapeutic strategies. | ||
- | + | The Crystal Structure of Lipopolysaccharide Binding Protein Reveals the Location of a Frequent Mutation that Impairs Innate Immunity.,Eckert JK, Kim YJ, Kim JI, Gurtler K, Oh DY, Sur S, Lundvall L, Hamann L, van der Ploeg A, Pickkers P, Giamarellos-Bourboulis E, Kubarenko AV, Weber AN, Kabesch M, Kumpf O, An HJ, Lee JO, Schumann RR Immunity. 2013 Oct 17;39(4):647-60. doi: 10.1016/j.immuni.2013.09.005. Epub 2013 , Oct 10. PMID:24120359<ref>PMID:24120359</ref> | |
- | + | ||
- | + | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | |
- | < | + | </div> |
+ | <div class="pdbe-citations 4m4d" style="background-color:#fffaf0;"></div> | ||
+ | == References == | ||
+ | <references/> | ||
+ | __TOC__ | ||
+ | </StructureSection> | ||
+ | [[Category: Large Structures]] | ||
[[Category: Mus musculus]] | [[Category: Mus musculus]] | ||
- | [[Category: An | + | [[Category: An HJ]] |
- | [[Category: Eckert | + | [[Category: Eckert JK]] |
- | [[Category: Giamarellos-Bourboulis | + | [[Category: Giamarellos-Bourboulis E]] |
- | [[Category: Gurtler | + | [[Category: Gurtler K]] |
- | [[Category: Hamann | + | [[Category: Hamann L]] |
- | [[Category: Kabesch | + | [[Category: Kabesch M]] |
- | [[Category: Kim | + | [[Category: Kim JI]] |
- | [[Category: Kim | + | [[Category: Kim YJ]] |
- | [[Category: Kubarenko | + | [[Category: Kubarenko AV]] |
- | [[Category: Kumpf | + | [[Category: Kumpf O]] |
- | [[Category: Lee | + | [[Category: Lee JO]] |
- | [[Category: Lundvall | + | [[Category: Lundvall L]] |
- | [[Category: Oh | + | [[Category: Oh DY]] |
- | [[Category: Pickkers | + | [[Category: Pickkers P]] |
- | [[Category: Ploeg | + | [[Category: Ploeg AH]] |
- | [[Category: Schumann | + | [[Category: Schumann RR]] |
- | [[Category: Weber | + | [[Category: Weber AN]] |
- | + | ||
- | + | ||
- | + | ||
- | + | ||
- | + |
Current revision
Crystal structure of lipopolysaccharide binding protein
|
Categories: Large Structures | Mus musculus | An HJ | Eckert JK | Giamarellos-Bourboulis E | Gurtler K | Hamann L | Kabesch M | Kim JI | Kim YJ | Kubarenko AV | Kumpf O | Lee JO | Lundvall L | Oh DY | Pickkers P | Ploeg AH | Schumann RR | Weber AN