2pod

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (01:19, 21 November 2024) (edit) (undo)
 
(15 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2pod.jpg|left|200px]]<br /><applet load="2pod" size="350" color="white" frame="true" align="right" spinBox="true"
 
-
caption="2pod, resolution 2.34&Aring;" />
 
-
'''Crystal structure of a member of enolase superfamily from Burkholderia pseudomallei K96243'''<br />
 
-
==About this Structure==
+
==Crystal structure of a member of enolase superfamily from Burkholderia pseudomallei K96243==
-
2POD is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Burkholderia_pseudomallei Burkholderia pseudomallei] with <scene name='pdbligand=NA:'>NA</scene> as [http://en.wikipedia.org/wiki/ligand ligand]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2POD OCA].
+
<StructureSection load='2pod' size='340' side='right'caption='[[2pod]], [[Resolution|resolution]] 2.34&Aring;' scene=''>
-
[[Category: Burkholderia pseudomallei]]
+
== Structural highlights ==
-
[[Category: Single protein]]
+
<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2POD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2POD FirstGlance]. <br>
-
[[Category: Almo, S C.]]
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.34&#8491;</td></tr>
-
[[Category: Bonanno, J.]]
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
-
[[Category: Burley, S K.]]
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2pod FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2pod OCA], [https://pdbe.org/2pod PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2pod RCSB], [https://www.ebi.ac.uk/pdbsum/2pod PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2pod ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/2pod TOPSAN]</span></td></tr>
-
[[Category: Gerlt, J.]]
+
</table>
-
[[Category: Gilmore, J M.]]
+
== Evolutionary Conservation ==
-
[[Category: Iizuka, M.]]
+
[[Image:Consurf_key_small.gif|200px|right]]
-
[[Category: NYSGXRC, New York Structural GenomiX Research Consortium.]]
+
Check<jmol>
-
[[Category: Ozyurt, S.]]
+
<jmolCheckbox>
-
[[Category: Patskovsky, Y.]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/po/2pod_consurf.spt"</scriptWhenChecked>
-
[[Category: Sauder, J M.]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
-
[[Category: Smith, D.]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Wasserman, S R.]]
+
</jmolCheckbox>
-
[[Category: NA]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2pod ConSurf].
-
[[Category: enolase]]
+
<div style="clear:both"></div>
-
[[Category: new york structural genomics research consortium]]
+
-
[[Category: new york structural genomix research consortium]]
+
-
[[Category: nysgrc]]
+
-
[[Category: nysgxrc]]
+
-
[[Category: protein structure initiative]]
+
-
[[Category: psi]]
+
-
[[Category: racemase]]
+
-
[[Category: structural genomics]]
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Feb 21 18:31:28 2008''
+
==See Also==
 +
*[[Enolase 3D structures|Enolase 3D structures]]
 +
*[[Mandelate racemase|Mandelate racemase]]
 +
*[[Mandelate racemase/muconate lactonizing enzyme 3D structures|Mandelate racemase/muconate lactonizing enzyme 3D structures]]
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Large Structures]]
 +
[[Category: Almo SC]]
 +
[[Category: Bonanno J]]
 +
[[Category: Burley SK]]
 +
[[Category: Gerlt J]]
 +
[[Category: Gilmore JM]]
 +
[[Category: Iizuka M]]
 +
[[Category: Ozyurt S]]
 +
[[Category: Patskovsky Y]]
 +
[[Category: Sauder JM]]
 +
[[Category: Smith D]]
 +
[[Category: Wasserman SR]]

Current revision

Crystal structure of a member of enolase superfamily from Burkholderia pseudomallei K96243

PDB ID 2pod

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools