This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
3iym
From Proteopedia
(Difference between revisions)
| (7 intermediate revisions not shown.) | |||
| Line 1: | Line 1: | ||
| - | {{STRUCTURE_3iym| PDB=3iym | SCENE= }} | ||
| - | ===Backbone Trace of the Capsid Protein Dimer of a Fungal Partitivirus from Electron Cryomicroscopy and Homology Modeling=== | ||
| - | {{ABSTRACT_PUBMED_20643089}} | ||
| - | == | + | ==Backbone Trace of the Capsid Protein Dimer of a Fungal Partitivirus from Electron Cryomicroscopy and Homology Modeling== |
| - | [[3iym]] is a 2 chain structure with sequence from [ | + | <SX load='3iym' size='340' side='right' viewer='molstar' caption='[[3iym]], [[Resolution|resolution]] 4.70Å' scene=''> |
| + | == Structural highlights == | ||
| + | <table><tr><td colspan='2'>[[3iym]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Penicillium_stoloniferum_virus_S Penicillium stoloniferum virus S]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3IYM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3IYM FirstGlance]. <br> | ||
| + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution|Resolution]] 4.7Å</td></tr> | ||
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3iym FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3iym OCA], [https://pdbe.org/3iym PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3iym RCSB], [https://www.ebi.ac.uk/pdbsum/3iym PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3iym ProSAT]</span></td></tr> | ||
| + | </table> | ||
| + | == Function == | ||
| + | [https://www.uniprot.org/uniprot/Q6YDQ6_9VIRU Q6YDQ6_9VIRU] | ||
| + | == Evolutionary Conservation == | ||
| + | [[Image:Consurf_key_small.gif|200px|right]] | ||
| + | Check<jmol> | ||
| + | <jmolCheckbox> | ||
| + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/iy/3iym_consurf.spt"</scriptWhenChecked> | ||
| + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
| + | <text>to colour the structure by Evolutionary Conservation</text> | ||
| + | </jmolCheckbox> | ||
| + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3iym ConSurf]. | ||
| + | <div style="clear:both"></div> | ||
==See Also== | ==See Also== | ||
| - | *[[Virus coat | + | *[[Virus coat proteins 3D structures|Virus coat proteins 3D structures]] |
| - | + | __TOC__ | |
| - | + | </SX> | |
| - | + | [[Category: Large Structures]] | |
| - | [[Category: Penicillium stoloniferum virus | + | [[Category: Penicillium stoloniferum virus S]] |
| - | [[Category: Baker | + | [[Category: Baker TS]] |
| - | [[Category: Ghabrial | + | [[Category: Ghabrial SA]] |
| - | [[Category: Guu | + | [[Category: Guu TSY]] |
| - | [[Category: Havens | + | [[Category: Havens WF]] |
| - | [[Category: Li | + | [[Category: Li H]] |
| - | [[Category: Nibert | + | [[Category: Nibert ML]] |
| - | [[Category: Ochoa | + | [[Category: Ochoa WF]] |
| - | [[Category: Pan | + | [[Category: Pan J]] |
| - | [[Category: Sinkovits | + | [[Category: Sinkovits RS]] |
| - | [[Category: Tang | + | [[Category: Tang J]] |
| - | [[Category: Tao | + | [[Category: Tao JY]] |
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
Current revision
Backbone Trace of the Capsid Protein Dimer of a Fungal Partitivirus from Electron Cryomicroscopy and Homology Modeling
| |||||||||
Categories: Large Structures | Penicillium stoloniferum virus S | Baker TS | Ghabrial SA | Guu TSY | Havens WF | Li H | Nibert ML | Ochoa WF | Pan J | Sinkovits RS | Tang J | Tao JY
