2q5c

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (09:14, 21 February 2024) (edit) (undo)
 
(16 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2q5c.jpg|left|200px]]<br /><applet load="2q5c" size="350" color="white" frame="true" align="right" spinBox="true"
 
-
caption="2q5c, resolution 1.49&Aring;" />
 
-
'''Crystal structure of NtrC family transcriptional regulator from Clostridium acetobutylicum'''<br />
 
-
==About this Structure==
+
==Crystal structure of NtrC family transcriptional regulator from Clostridium acetobutylicum==
-
2Q5C is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Clostridium_acetobutylicum_atcc_824 Clostridium acetobutylicum atcc 824] with <scene name='pdbligand=SO4:'>SO4</scene> and <scene name='pdbligand=GOL:'>GOL</scene> as [http://en.wikipedia.org/wiki/ligands ligands]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2Q5C OCA].
+
<StructureSection load='2q5c' size='340' side='right'caption='[[2q5c]], [[Resolution|resolution]] 1.49&Aring;' scene=''>
-
[[Category: Clostridium acetobutylicum atcc 824]]
+
== Structural highlights ==
-
[[Category: Single protein]]
+
<table><tr><td colspan='2'>[[2q5c]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Clostridium_acetobutylicum_ATCC_824 Clostridium acetobutylicum ATCC 824]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2Q5C OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2Q5C FirstGlance]. <br>
-
[[Category: Almo, S C.]]
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.49&#8491;</td></tr>
-
[[Category: Burley, S K.]]
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-
[[Category: Dickey, M.]]
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2q5c FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2q5c OCA], [https://pdbe.org/2q5c PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2q5c RCSB], [https://www.ebi.ac.uk/pdbsum/2q5c PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2q5c ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/2q5c TOPSAN]</span></td></tr>
-
[[Category: Groshong, K.]]
+
</table>
-
[[Category: Iizuka, M.]]
+
== Function ==
-
[[Category: NYSGXRC, New York Structural GenomiX Research Consortium.]]
+
[https://www.uniprot.org/uniprot/Q97LU5_CLOAB Q97LU5_CLOAB]
-
[[Category: Ramagopal, U A.]]
+
== Evolutionary Conservation ==
-
[[Category: Rodgers, L.]]
+
[[Image:Consurf_key_small.gif|200px|right]]
-
[[Category: Sauder, J M.]]
+
Check<jmol>
-
[[Category: Toro, R.]]
+
<jmolCheckbox>
-
[[Category: GOL]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/q5/2q5c_consurf.spt"</scriptWhenChecked>
-
[[Category: SO4]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: new york structural genomix research consortium]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: ntrc family transcriptional regulator]]
+
</jmolCheckbox>
-
[[Category: nysgxrc]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2q5c ConSurf].
-
[[Category: protein structure initiative]]
+
<div style="clear:both"></div>
-
[[Category: psi-2]]
+
__TOC__
-
[[Category: structural genomics]]
+
</StructureSection>
-
 
+
[[Category: Clostridium acetobutylicum ATCC 824]]
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Feb 21 18:36:12 2008''
+
[[Category: Large Structures]]
 +
[[Category: Almo SC]]
 +
[[Category: Burley SK]]
 +
[[Category: Dickey M]]
 +
[[Category: Groshong K]]
 +
[[Category: Iizuka M]]
 +
[[Category: Ramagopal UA]]
 +
[[Category: Rodgers L]]
 +
[[Category: Sauder JM]]
 +
[[Category: Toro R]]

Current revision

Crystal structure of NtrC family transcriptional regulator from Clostridium acetobutylicum

PDB ID 2q5c

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools