2xrm

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:03, 23 August 2023) (edit) (undo)
 
(5 intermediate revisions not shown.)
Line 1: Line 1:
-
{{STRUCTURE_2xrm| PDB=2xrm | SCENE= }}
 
-
===Processed Intracellular subtilisin from B. clausii===
 
-
{{ABSTRACT_PUBMED_21307308}}
 
-
==About this Structure==
+
==Processed Intracellular subtilisin from B. clausii==
-
[[2xrm]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_700160 Atcc 700160]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2XRM OCA].
+
<StructureSection load='2xrm' size='340' side='right'caption='[[2xrm]], [[Resolution|resolution]] 2.60&Aring;' scene=''>
 +
== Structural highlights ==
 +
<table><tr><td colspan='2'>[[2xrm]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Alkalihalobacillus_clausii Alkalihalobacillus clausii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2XRM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2XRM FirstGlance]. <br>
 +
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.6&#8491;</td></tr>
 +
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=1PE:PENTAETHYLENE+GLYCOL'>1PE</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=SR:STRONTIUM+ION'>SR</scene></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2xrm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2xrm OCA], [https://pdbe.org/2xrm PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2xrm RCSB], [https://www.ebi.ac.uk/pdbsum/2xrm PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2xrm ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/D0AB41_ALKCL D0AB41_ALKCL]
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
A distinct class of the biologically important subtilisin family of serine proteases functions exclusively within the cell and forms a major component of the bacilli degradome. However, the mode and mechanism of posttranslational regulation of intracellular protease activity are unknown. Here we describe the role played by a short N-terminal extension prosequence novel amongst the subtilisins that regulates intracellular subtilisin protease (ISP) activity through two distinct modes: active site blocking and catalytic triad rearrangement. The full-length proenzyme (proISP) is inactive until specific proteolytic processing removes the first 18 amino acids that comprise the N-terminal extension, with processing appearing to be performed by ISP itself. A synthetic peptide corresponding to the N-terminal extension behaves as a mixed noncompetitive inhibitor of active ISP with a K(i) of 1 muM. The structure of the processed form has been determined at 2.6 A resolution and compared with that of the full-length protein, in which the N-terminal extension binds back over the active site. Unique to ISP, a conserved proline introduces a backbone kink that shifts the scissile bond beyond reach of the catalytic serine and in addition the catalytic triad is disrupted. In the processed form, access to the active site is unblocked by removal of the N-terminal extension and the catalytic triad rearranges to a functional conformation. These studies provide a new molecular insight concerning the mechanisms by which subtilisins and protease activity as a whole, especially within the confines of a cell, can be regulated.
-
==See Also==
+
Regulation of an intracellular subtilisin protease activity by a short propeptide sequence through an original combined dual mechanism.,Gamble M, Kunze G, Dodson EJ, Wilson KS, Jones DD Proc Natl Acad Sci U S A. 2011 Mar 1;108(9):3536-41. Epub 2011 Feb 9. PMID:21307308<ref>PMID:21307308</ref>
-
*[[Subtilisin|Subtilisin]]
+
-
==Reference==
+
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-
<ref group="xtra">PMID:021307308</ref><references group="xtra"/><references/>
+
</div>
-
[[Category: Atcc 700160]]
+
<div class="pdbe-citations 2xrm" style="background-color:#fffaf0;"></div>
-
[[Category: Subtilisin]]
+
 
-
[[Category: Dodson, E J.]]
+
==See Also==
-
[[Category: Gamble, M.]]
+
*[[Subtilisin 3D structures|Subtilisin 3D structures]]
-
[[Category: Jones, D D.]]
+
== References ==
-
[[Category: Kunze, G.]]
+
<references/>
-
[[Category: Wilson, K S.]]
+
__TOC__
-
[[Category: Activated form]]
+
</StructureSection>
-
[[Category: Hydrolase]]
+
[[Category: Alkalihalobacillus clausii]]
-
[[Category: Post-translational modification]]
+
[[Category: Large Structures]]
 +
[[Category: Dodson EJ]]
 +
[[Category: Gamble M]]
 +
[[Category: Jones DD]]
 +
[[Category: Kunze G]]
 +
[[Category: Wilson KS]]

Current revision

Processed Intracellular subtilisin from B. clausii

PDB ID 2xrm

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools