This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2qru

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:31, 25 June 2021) (edit) (undo)
 
(12 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2qru.jpg|left|200px]]<br /><applet load="2qru" size="350" color="white" frame="true" align="right" spinBox="true"
 
-
caption="2qru, resolution 1.650&Aring;" />
 
-
'''Crystal structure of an alpha/beta hydrolase superfamily protein from Enterococcus faecalis'''<br />
 
-
==About this Structure==
+
==Crystal structure of an alpha/beta hydrolase superfamily protein from Enterococcus faecalis==
-
2QRU is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Enterococcus_faecalis_v583 Enterococcus faecalis v583] with <scene name='pdbligand=PO4:'>PO4</scene> and <scene name='pdbligand=EDO:'>EDO</scene> as [http://en.wikipedia.org/wiki/ligands ligands]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2QRU OCA].
+
<StructureSection load='2qru' size='340' side='right'caption='[[2qru]], [[Resolution|resolution]] 1.65&Aring;' scene=''>
-
[[Category: Enterococcus faecalis v583]]
+
== Structural highlights ==
-
[[Category: Single protein]]
+
<table><tr><td colspan='2'>[[2qru]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Entfa Entfa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2QRU OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2QRU FirstGlance]. <br>
-
[[Category: Cuff, M E.]]
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
-
[[Category: Joachimiak, A.]]
+
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
[[Category: MCSG, Midwest Center for Structural Genomics.]]
+
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">EF_0381 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=226185 ENTFA])</td></tr>
-
[[Category: Moy, S.]]
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2qru FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2qru OCA], [https://pdbe.org/2qru PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2qru RCSB], [https://www.ebi.ac.uk/pdbsum/2qru PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2qru ProSAT], [https://www.topsan.org/Proteins/MCSG/2qru TOPSAN]</span></td></tr>
-
[[Category: Volkart, L.]]
+
</table>
-
[[Category: EDO]]
+
== Evolutionary Conservation ==
-
[[Category: PO4]]
+
[[Image:Consurf_key_small.gif|200px|right]]
-
[[Category: alpha/beta-hydrolase]]
+
Check<jmol>
-
[[Category: enterococcus faecalis]]
+
<jmolCheckbox>
-
[[Category: mcsg]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/qr/2qru_consurf.spt"</scriptWhenChecked>
-
[[Category: midwest center for structural genomics]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: protein structure initiative]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: psi-2]]
+
</jmolCheckbox>
-
[[Category: structural genomics]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2qru ConSurf].
-
[[Category: unknown function]]
+
<div style="clear:both"></div>
-
 
+
__TOC__
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Feb 21 18:41:45 2008''
+
</StructureSection>
 +
[[Category: Entfa]]
 +
[[Category: Large Structures]]
 +
[[Category: Cuff, M E]]
 +
[[Category: Joachimiak, A]]
 +
[[Category: Structural genomic]]
 +
[[Category: Moy, S]]
 +
[[Category: Volkart, L]]
 +
[[Category: Alpha/beta-hydrolase]]
 +
[[Category: Enterococcus faecali]]
 +
[[Category: Mcsg]]
 +
[[Category: PSI, Protein structure initiative]]
 +
[[Category: Unknown function]]

Current revision

Crystal structure of an alpha/beta hydrolase superfamily protein from Enterococcus faecalis

PDB ID 2qru

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools