3wmr
From Proteopedia
(Difference between revisions)
(New page: '''Unreleased structure''' The entry 3wmr is ON HOLD until Paper Publication Authors: Shinohara, Y., Miyanaga, A., Kudo, F., Eguchi, T. Description: Crystal structure of VinJ) |
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| - | '''Unreleased structure''' | ||
| - | + | ==Crystal structure of VinJ== | |
| + | <StructureSection load='3wmr' size='340' side='right'caption='[[3wmr]], [[Resolution|resolution]] 1.95Å' scene=''> | ||
| + | == Structural highlights == | ||
| + | <table><tr><td colspan='2'>[[3wmr]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Streptomyces_halstedii Streptomyces halstedii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3WMR OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3WMR FirstGlance]. <br> | ||
| + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.95Å</td></tr> | ||
| + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=P4G:1-ETHOXY-2-(2-ETHOXYETHOXY)ETHANE'>P4G</scene></td></tr> | ||
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3wmr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3wmr OCA], [https://pdbe.org/3wmr PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3wmr RCSB], [https://www.ebi.ac.uk/pdbsum/3wmr PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3wmr ProSAT]</span></td></tr> | ||
| + | </table> | ||
| + | == Function == | ||
| + | [https://www.uniprot.org/uniprot/Q76KY6_STRHA Q76KY6_STRHA] | ||
| + | <div style="background-color:#fffaf0;"> | ||
| + | == Publication Abstract from PubMed == | ||
| + | VinJ is an amidohydrolase belonging to the serine peptidase family that catalyzes the hydrolysis of the terminal aminoacyl moiety of a polyketide intermediate during the biosynthesis of vicenistatin. Herein, we report the crystal structure of VinJ. VinJ possesses a unique hydrophobic tunnel for the recognition of the polyketide chain moiety of its substrate in the cap domain. Taken together with the results of phylogenetic analysis, our results suggest that VinJ represents a new amidohydrolase family that is different from the known alpha/beta hydrolase type serine peptidases. | ||
| - | + | The crystal structure of the amidohydrolase VinJ shows a unique hydrophobic tunnel for its interaction with polyketide substrates.,Shinohara Y, Miyanaga A, Kudo F, Eguchi T FEBS Lett. 2014 Mar 18;588(6):995-1000. doi: 10.1016/j.febslet.2014.01.060. Epub , 2014 Feb 11. PMID:24530530<ref>PMID:24530530</ref> | |
| - | + | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | |
| + | </div> | ||
| + | <div class="pdbe-citations 3wmr" style="background-color:#fffaf0;"></div> | ||
| + | == References == | ||
| + | <references/> | ||
| + | __TOC__ | ||
| + | </StructureSection> | ||
| + | [[Category: Large Structures]] | ||
| + | [[Category: Streptomyces halstedii]] | ||
| + | [[Category: Eguchi T]] | ||
| + | [[Category: Kudo F]] | ||
| + | [[Category: Miyanaga A]] | ||
| + | [[Category: Shinohara Y]] | ||
Current revision
Crystal structure of VinJ
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