This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2r47

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (04:13, 2 July 2021) (edit) (undo)
 
(13 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2r47.jpg|left|200px]]<br /><applet load="2r47" size="350" color="white" frame="true" align="right" spinBox="true"
 
-
caption="2r47, resolution 1.880&Aring;" />
 
-
'''Crystal structure of MTH_862 protein of unknown function from Methanothermobacter thermautotrophicus'''<br />
 
-
==About this Structure==
+
==Crystal structure of MTH_862 protein of unknown function from Methanothermobacter thermautotrophicus==
-
2R47 is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Methanothermobacter_thermautotrophicus_str._delta_h Methanothermobacter thermautotrophicus str. delta h] with <scene name='pdbligand=SO4:'>SO4</scene> as [http://en.wikipedia.org/wiki/ligand ligand]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2R47 OCA].
+
<StructureSection load='2r47' size='340' side='right'caption='[[2r47]], [[Resolution|resolution]] 1.88&Aring;' scene=''>
-
[[Category: Methanothermobacter thermautotrophicus str. delta h]]
+
== Structural highlights ==
-
[[Category: Single protein]]
+
<table><tr><td colspan='2'>[[2r47]] is a 5 chain structure with sequence from [https://en.wikipedia.org/wiki/Metth Metth]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2R47 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2R47 FirstGlance]. <br>
-
[[Category: Edwards, A.]]
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-
[[Category: Evdokimova, E.]]
+
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=OCS:CYSTEINESULFONIC+ACID'>OCS</scene></td></tr>
-
[[Category: Joachimiak, A.]]
+
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">MTH_862 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=187420 METTH])</td></tr>
-
[[Category: Kudritska, M.]]
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2r47 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2r47 OCA], [https://pdbe.org/2r47 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2r47 RCSB], [https://www.ebi.ac.uk/pdbsum/2r47 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2r47 ProSAT], [https://www.topsan.org/Proteins/MCSG/2r47 TOPSAN]</span></td></tr>
-
[[Category: MCSG, Midwest Center for Structural Genomics.]]
+
</table>
-
[[Category: Osipiuk, J.]]
+
== Evolutionary Conservation ==
-
[[Category: Savchenko, A.]]
+
[[Image:Consurf_key_small.gif|200px|right]]
-
[[Category: SO4]]
+
Check<jmol>
-
[[Category: apc5901]]
+
<jmolCheckbox>
-
[[Category: mcsg]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/r4/2r47_consurf.spt"</scriptWhenChecked>
-
[[Category: midwest center for structural genomics]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: protein structure initiative]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: psi-2]]
+
</jmolCheckbox>
-
[[Category: structural genomics]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2r47 ConSurf].
-
[[Category: unknown function]]
+
<div style="clear:both"></div>
-
 
+
__TOC__
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Feb 21 18:44:40 2008''
+
</StructureSection>
 +
[[Category: Large Structures]]
 +
[[Category: Metth]]
 +
[[Category: Edwards, A]]
 +
[[Category: Evdokimova, E]]
 +
[[Category: Joachimiak, A]]
 +
[[Category: Kudritska, M]]
 +
[[Category: Structural genomic]]
 +
[[Category: Osipiuk, J]]
 +
[[Category: Savchenko, A]]
 +
[[Category: Apc5901]]
 +
[[Category: Mcsg]]
 +
[[Category: PSI, Protein structure initiative]]
 +
[[Category: Unknown function]]

Current revision

Crystal structure of MTH_862 protein of unknown function from Methanothermobacter thermautotrophicus

PDB ID 2r47

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools